RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 BTNL3Q6UXE8 466 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 ATP5G3P48201 142 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 Q6P435 159 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF114Q8NC26 417 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 TMEM204Q9BSN7 226 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 PARD6GQ9BYG4 376 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-202ENST00000341753 STRADBQ9C0K7 418 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 TIMM9Q9Y5J7 89 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF705FA8MVS1 300 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF705DP0CH99 300 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF705BP0CI00 300 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 RPL29P47914 159 aaKnown RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 LINC00205P59089 165 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 RPL30P62888 115 aaKnown RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 HOXA4Q00056 320 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 KCNIP4Q6PIL6 250 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF573Q86YE8 665 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 TMEM147Q9BVK8 224 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 MANBALQ9NQG1 85 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 FOXJ2Q9P0K8 574 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 USF3Q68DE3 2245 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 A0A1W2PNU3 283 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 GRIFINA4D1Z8 144 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 OR2H2O95918 312 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 CCKARP32238 428 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 SRP14P37108 136 aaKnown RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 CEBPDP49716 269 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-202ENST00000341753 GNG3P63215 75 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 NPCDR1Q9BY65 106 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 MED13Q9UHV7 2174 aa18.81■□□□□ 0.6
TRIM28-202ENST00000341753 RBMXL2O75526 392 aaKnown RBP18.8■□□□□ 0.6
TRIM28-202ENST00000341753 SELEP16581 610 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 TRAV38-1A0A0B4J264 116 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 ODAMA1E959 279 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 COX5AP20674 150 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 CYB561P49447 251 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 ERVFC1-1P60608 527 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 LINC01551Q86U37 167 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 SDSLQ96GA7 329 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 PIGBOS1A0A0B4J2F0 54 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 S1PR2O95136 353 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 NDUFB4O95168 129 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF25P17030 456 aaPredicted RBP18.8■□□□□ 0.6
TRIM28-202ENST00000341753 RAB4BP61018 213 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 GNB1P62873 340 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 OR10P1Q8NGE3 313 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 POM121L2Q96KW2 1035 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 NAGKQ9UJ70 344 aa18.8■□□□□ 0.6
TRIM28-202ENST00000341753 CFAP47Q6ZTR5 3102 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 CACNA1DQ01668 2161 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 LRP5LA4QPB2 252 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 A6NNC1 897 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 M0R143 59 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 TYMSP04818 313 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 COX5BP10606 129 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 RPL15P61313 204 aaKnown RBP18.79■□□□□ 0.6
TRIM28-202ENST00000341753 PPP1CBP62140 327 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF709Q8N972 641 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 C5orf30Q96GV9 206 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 MS4A10Q96PG2 267 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 OR2D2Q9H210 308 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 HSPB7Q9UBY9 170 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 C9orf172C9J069 976 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF705AQ6ZN79 300 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-202ENST00000341753 LINC00596Q86U02 117 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 TMEM68Q96MH6 324 aa18.79■□□□□ 0.6
TRIM28-202ENST00000341753 PMS2P5A8MQ11 134 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 ACP1P24666 158 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 GFRA1P56159 465 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 GTF3C1Q12789 2109 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 ZNF497Q6ZNH5 498 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 TDRG1Q3Y452 100 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 DTD1Q8TEA8 209 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 TBX15Q96SF7 602 aa18.78■□□□□ 0.6
TRIM28-202ENST00000341753 TNRC6AQ8NDV7 1962 aaKnown RBP18.77■□□□□ 0.6
TRIM28-202ENST00000341753 FAM166BA8MTA8 275 aa18.77■□□□□ 0.6
TRIM28-202ENST00000341753 NPIPB11E5RHQ5 1161 aa18.77■□□□□ 0.6
TRIM28-202ENST00000341753 CDC34P49427 236 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-202ENST00000341753 TDGF1P3P51864 188 aa18.77■□□□□ 0.6
TRIM28-202ENST00000341753 C1orf194Q5T5A4 169 aa18.77■□□□□ 0.6
TRIM28-202ENST00000341753 NBEAQ8NFP9 2946 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 LNP1A1A4G5 178 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 LRRC30A6NM36 301 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 COL8A2P25067 703 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 SSPNQ14714 243 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 C3AR1Q16581 482 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 LINC00696Q6ZRV3 163 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 WDR86Q86TI4 376 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 IL17BQ9UHF5 180 aa18.77■□□□□ 0.59
TRIM28-202ENST00000341753 C17orf98A8MV24 154 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 SS18L1O75177 396 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-202ENST00000341753 MBP02144 154 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 TFF1P04155 84 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 WNT2P09544 360 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 MCEMP1Q8IX19 187 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 OR52L2PQ8NGH6 319 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 SGMS2Q8NHU3 365 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 TMEM45BQ96B21 275 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 IMMP2LQ96T52 175 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 MLNRO43193 412 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms