RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ACTBL2Q562R1 376 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 TNFAIP8L3Q5GJ75 292 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 TEX30Q5JUR7 227 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 BRMS1LQ5PSV4 323 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PRR9Q5T870 116 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 FAM222AQ5U5X8 452 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 FKBP1CQ5VVH2 108 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 FAM45BPQ6NSW5 357 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 MED27Q6P2C8 311 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 DHRS4L2Q6PKH6 230 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 TPGS1Q6ZTW0 290 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 C10orf107Q8IVU9 208 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 BLIDQ8IZY5 108 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 C4orf33Q8N1A6 199 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SLC35F6Q8N357 371 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SPANXA2-OT1Q8N9U9 137 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 OR4M1Q8NGD0 313 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 OR5L1Q8NGL2 311 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 OR5H6Q8NGV6 325 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 C22orf15Q8WYQ4 148 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 HGDQ93099 445 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 BORCS5Q969J3 196 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 S100PBPQ96BU1 408 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 DDIT4LQ96D03 193 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 YIPF6Q96EC8 236 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 CHMP6Q96FZ7 201 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 MRPL48Q96GC5 212 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SMIM8Q96KF7 97 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PGLYRP3Q96LB9 341 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 TMEM56Q96MV1 263 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SPACA5Q96QH8 159 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 CHCHD7Q9BUK0 85 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PARD6GQ9BYG4 376 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SLC19A3Q9BZV2 496 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 DHX35Q9H5Z1 703 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 METTL17Q9H7H0 456 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 FBXO6Q9NRD1 293 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PLEKHJ1Q9NW61 149 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PRO0628Q9UI54 55 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 FARSAQ9Y285 508 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 ENPP4Q9Y6X5 453 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 CACNA1DQ01668 2161 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SHANK1Q9Y566 2161 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 ROBO3Q96MS0 1386 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 NBPF19A0A087WUL8 3843 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PTPRSQ13332 1948 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 SEC16AO15027 2179 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 URB1O60287 2271 aaKnown RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 MTORP42345 2549 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 A0A1B0GV90 55 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 A0A1W2PRG6 482 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 EVPLLA8MZ36 301 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 H3BSA7 217 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 UPK1AO00322 258 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 TXNDC9O14530 226 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 SLC22A1O15245 554 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 ACOX3O15254 700 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PLIN3O60664 434 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 CNMDO75829 334 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 AHSA1O95433 338 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 DHFRP00374 187 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 HLA-AP01891 365 aaKnown RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 APOC1P02654 83 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 CDK1P06493 297 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 RPS17P08708 135 aaKnown RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PAEPP09466 180 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 HLA-EP13747 358 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 MAGEA2P43356 314 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 RPL5P46777 297 aaKnown RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 LGALS7P47929 136 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 ACOT2P49753 483 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 SERPINB9P50453 376 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 AKR1D1P51857 326 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 DLX6P56179 175 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 CLDN12P56749 244 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 SPCS3P61009 180 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 COPZ1P61923 177 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PRDX1Q06830 199 aaKnown RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 COQ5Q5HYK3 327 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 SAPCD1Q5SSQ6 148 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 KPRPQ5T749 579 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 C3orf33Q6P1S2 294 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 GUSBP11Q6P575 273 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 C5orf46Q6UWT4 87 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 DRAM2Q6UX65 266 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 IZUMO2Q6UXV1 221 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PAGE2Q7Z2X7 111 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PRNTQ86SH4 94 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 C2orf73Q8N5S3 287 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 TMEM251Q8N6I4 163 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 ST20-AS1Q8NBB2 130 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 OR2M7Q8NG81 312 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 OR4M2Q8NGB6 313 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 OR8J2Q8NGG1 315 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 OR1L1Q8NH94 360 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 YIPF5Q969M3 257 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PPWD1Q96BP3 646 aaKnown RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 TESCQ96BS2 214 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 FMC1Q96HJ9 113 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 MBOAT7Q96N66 472 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms