RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SLC2A10O95528 541 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 HPRT1P00492 218 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 AMY1AP04745 511 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 FGF5P12034 268 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 MYPOPQ86VE0 399 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 STPG3Q8N7X2 389 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 OR4P4Q8NGL7 312 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 GNRHR2Q96P88 292 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 GNB1LQ9BYB4 327 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 TRBV7-9A0A0J9YWB2 115 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 EIF3GO75821 320 aaKnown RBP eCLIP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CA2P00918 260 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PVRP15151 417 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 GABRG2P18507 467 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PRDX2P32119 198 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM88Q6PEY1 159 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 C6orf15Q6UXA7 325 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 OR4A5Q8NH83 315 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ALG14Q96F25 216 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 METTL26Q96S19 204 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 MS4A7Q9GZW8 240 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PARP12Q9H0J9 701 aaKnown RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 COL8A1P27658 744 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM108Q6UXF1 575 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 ASB10Q8WXI3 467 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 CITED1Q99966 193 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 PRDM13Q9H4Q3 707 aa4.58□□□□□ -1.68
SCN1A-201ENST00000303395 MRPS18CQ9Y3D5 142 aaKnown RBP4.58□□□□□ -1.68
SCN1A-201ENST00000303395 LOC285556D6RIA3 1793 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 C5orf67F2Z3F1 127 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 J3QRE1 110 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 RAB29O14966 203 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 TSPOP30536 169 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CD300CQ08708 224 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 C1orf194Q5T5A4 169 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 C16orf52Q8NHV5 167 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 SLC25A38Q96DW6 304 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 C6orf106Q9H6K1 298 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-201ENST00000303395 WSB2Q9NYS7 404 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-201ENST00000303395 NPFFO15130 113 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 TIMP1P01033 207 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CAMPP49913 170 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 FAM89BQ8N5H3 189 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OR8B12Q8NGG6 310 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OR8B3Q8NGG8 313 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 GPBAR1Q8TDU6 330 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 FBXO17Q96EF6 278 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OR8B2Q96RD0 313 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 LPAR2Q9HBW0 351 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 EML6Q6ZMW3 1958 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 TRAV30A0A087WSZ9 112 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 PLPP3O14495 311 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 TEPPQ6URK8 271 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF740Q8NDX6 193 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 RND1Q92730 232 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 MMP17Q9ULZ9 603 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 USF3Q68DE3 2245 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OR2W5A6NFC9 320 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 DIRC3C9JPN6 131 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 LMO7DNF2Z398 122 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 H3BRM9 83 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 FGF17O60258 216 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF25P17030 456 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-201ENST00000303395 FZD5Q13467 585 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 PRSS53Q2L4Q9 553 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OR52B4Q8NGK2 314 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 SPSB4Q96A44 273 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CTHRC1Q96CG8 243 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 TM4SF19Q96DZ7 209 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OVOL2Q9BRP0 275 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 DERL1Q9BUN8 251 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 HEXA-AS1Q9H8Q6 139 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 IGHV3OR16-12A0A075B7B8 117 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 IGKV3OR2-268A0A0C4DH90 116 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 EREGO14944 169 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 LDB3O75112 727 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CLDN14O95500 239 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 PSMB5P28074 263 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 TIAL1Q01085 375 aaKnown RBP eCLIP4.57□□□□□ -1.68
SCN1A-201ENST00000303395 SPATA31B1PQ5VZV4 182 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CLEC2AQ6UVW9 174 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OR52M1Q8NGK5 317 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 OSTCQ9NRP0 149 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 COA3Q9Y2R0 106 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-201ENST00000303395 GREB1Q4ZG55 1949 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 IGLV3-32A0A0A0MS00 114 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 LINC00271P0C7V0 271 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CNTFRP26992 372 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 AVPR2P30518 371 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 SUMO4Q6EEV6 95 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 CCDC144NLQ6NUI1 221 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 LINC00114Q6XXX2 140 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 APCDD1LQ8NCL9 501 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 PFN4Q8NHR9 129 aa4.57□□□□□ -1.68
SCN1A-201ENST00000303395 A0A0G2JK05 382 aa4.56□□□□□ -1.68
SCN1A-201ENST00000303395 VSIG8P0DPA2 414 aa4.56□□□□□ -1.68
SCN1A-201ENST00000303395 IAPPP10997 89 aa4.56□□□□□ -1.68
SCN1A-201ENST00000303395 B4GALNT1Q00973 533 aa4.56□□□□□ -1.68
SCN1A-201ENST00000303395 MESTQ5EB52 335 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms