RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 IGKV1D-39P04432 117 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 POLR2GP62487 172 aaKnown RBP eCLIP12.7□□□□□ -0.38
SF3B4-201ENST00000271628 VAMP2P63027 116 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 CXorf66Q5JRM2 361 aaPredicted RBP12.7□□□□□ -0.38
SF3B4-201ENST00000271628 SH3BGRL3Q9H299 93 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 RPS10P5Q9NQ39 176 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 CISD1Q9NZ45 108 aaKnown RBP12.7□□□□□ -0.38
SF3B4-201ENST00000271628 PIEZO1Q92508 2521 aa12.7□□□□□ -0.38
SF3B4-201ENST00000271628 PPIAL4EA0A075B759 164 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 KBTBD11-OT1A0A1B0GTJ5 212 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 PPIAL4DF5H284 164 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 TMEM178BH3BS89 294 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 ITGB1BP1O14713 200 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 CLDN1O95832 211 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 MT-ND4LP03901 98 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 PPIAL4FP0DN26 164 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 RPL35P42766 123 aaKnown RBP12.69□□□□□ -0.38
SF3B4-201ENST00000271628 FHITP49789 147 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 CORO2AQ92828 525 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 SLC35B3Q9H1N7 401 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 LYRM2Q9NU23 88 aaPredicted RBP12.69□□□□□ -0.38
SF3B4-201ENST00000271628 CLN8Q9UBY8 286 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 PSG11Q9UQ72 335 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 LAMP3Q9UQV4 416 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 PPIAL4AQ9Y536 164 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 DEFB108AA8MXU0 73 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 TMPRSS2O15393 492 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 LOXL3P58215 753 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 LTC4SQ16873 150 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 TMEM30BQ3MIR4 351 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 FAM53AQ6NSI3 398 aaPredicted RBP12.69□□□□□ -0.38
SF3B4-201ENST00000271628 TGIF2LYQ8IUE0 185 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 FGFRL1Q8N441 504 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 ZNF808Q8N4W9 903 aaPredicted RBP12.69□□□□□ -0.38
SF3B4-201ENST00000271628 CCL17Q92583 94 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 NEUROG1Q92886 237 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 CLCC1Q96S66 551 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 TMEM106BQ9NUM4 274 aa12.69□□□□□ -0.38
SF3B4-201ENST00000271628 C7orf77A4D0Y5 90 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 FAM24AA6NFZ4 105 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 ZNF729A6NN14 1252 aaPredicted RBP12.68□□□□□ -0.38
SF3B4-201ENST00000271628 SSSCA1O60232 199 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 SELLP14151 372 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 GPR12P47775 334 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 RAB7AP51149 207 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 BAXQ07812 192 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 RHEBQ15382 184 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 AWAT1Q58HT5 328 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 CD300LFQ8TDQ1 290 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 TCTEX1D2Q8WW35 142 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 COA4Q9NYJ1 87 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 CHD8Q9HCK8 2581 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 A0A0G2JRQ6 117 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 BTBD17A6NE02 478 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 C1orf196B1AJZ1 125 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 ST8SIA5O15466 376 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 EPHA1P21709 976 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 GRNP28799 593 aaKnown RBP12.68□□□□□ -0.38
SF3B4-201ENST00000271628 C17orf58Q2M2W7 97 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 TMEM182Q6ZP80 229 aaPredicted RBP12.68□□□□□ -0.38
SF3B4-201ENST00000271628 TMEM252Q8N6L7 170 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 FAM216BQ8N7L0 139 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 SFT2D1Q8WV19 159 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 HIST1H2BAQ96A08 127 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 DCAF16Q9NXF7 216 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 GAB2Q9UQC2 676 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 MMP24Q9Y5R2 645 aa12.68□□□□□ -0.38
SF3B4-201ENST00000271628 SMG1Q96Q15 3661 aaKnown RBP12.68□□□□□ -0.38
SF3B4-201ENST00000271628 RAI1Q7Z5J4 1906 aaPredicted RBP12.67□□□□□ -0.38
SF3B4-201ENST00000271628 hADV38S2A0JD32 116 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 CHST1O43916 411 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 C1QL1O75973 258 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 CLDN14O95500 239 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 IGKV1-5P01602 117 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 RPL30P62888 115 aaKnown RBP12.67□□□□□ -0.38
SF3B4-201ENST00000271628 OR2G3Q8NGZ4 309 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 FAM213BQ8TBF2 198 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 C5orf30Q96GV9 206 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 RAB40CQ96S21 281 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 MAGT1Q9H0U3 335 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 LINC00574Q9H8X3 128 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 CACNG5Q9UF02 275 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 NCOR2Q9Y618 2525 aa12.67□□□□□ -0.38
SF3B4-201ENST00000271628 IGSF23A1L1A6 192 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 SNRNP70P08621 437 aaKnown RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 ATP6V0CP27449 155 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 MEF2CQ06413 473 aaPredicted RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 HABP2Q14520 560 aaPredicted RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 AKIRIN2Q53H80 203 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 DUX4L9Q6RFH8 374 aaPredicted RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 ETV3LQ6ZN32 361 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 Q6ZRM9 215 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 MUC15Q8N387 334 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 C2CD4CQ8TF44 421 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 GNPNAT1Q96EK6 184 aaPredicted RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 C12orf57Q99622 126 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 UNKLQ9H9P5 680 aaKnown RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 GFOD1Q9NXC2 390 aa12.66□□□□□ -0.38
SF3B4-201ENST00000271628 SLC25A10Q9UBX3 287 aaPredicted RBP12.66□□□□□ -0.38
SF3B4-201ENST00000271628 DSCAML1Q8TD84 2053 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms