RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 COX11Q9Y6N1 276 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 DOT1LQ8TEK3 1739 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 SRSF4Q08170 494 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 ST6GAL2Q96JF0 529 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 SCGB3A1Q96QR1 104 aa12.14□□□□□ -0.47
CCDC88A-201ENST00000263630 HMX2A2RU54 273 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 TNFSF14O43557 240 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 LCN2P80188 198 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 Q5PR19 223 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 ZFAND6Q6FIF0 208 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 RHOVQ96L33 236 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 MRPL20Q9BYC9 149 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 CYSLTR1Q9Y271 337 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 PPIAL4EA0A075B759 164 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 PPIAL4DF5H284 164 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 PPIAL4FP0DN26 164 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 PLNP26678 52 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 LYZL2Q7Z4W2 148 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 PPIAL4AQ9Y536 164 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 FAM186AA6NE01 2351 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 RPL32P62910 135 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 MARS2Q96GW9 593 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 OR2H1Q9GZK4 316 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 TOMM7Q9P0U1 55 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 APOMO95445 188 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 COL16A1Q07092 1604 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 ARL14EPLP0DKL9 152 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 DMRTA1Q5VZB9 504 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 MYOFQ9NZM1 2061 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 CBLN4Q9NTU7 201 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 C9orf62Q8N4C0 152 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 GCSAMQ8N6F7 178 aa12.13□□□□□ -0.47
CCDC88A-201ENST00000263630 PCNX2A6NKB5 2137 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 A0A1B0GW15 77 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 SHISA8B8ZZ34 492 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 SYNGR3O43761 229 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 NPPCP23582 126 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 CYB5R2Q6BCY4 276 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 COX6B1P14854 86 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 POLR2AP24928 1970 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 C16orf97H3BN30 126 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 NDUFA2O43678 99 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 CLDND2Q8NHS1 167 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 VSTM2LQ96N03 204 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 COL10A1Q03692 680 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 FAM209AQ5JX71 171 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 CNRIP1Q96F85 164 aaPredicted RBP12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 KLKB1P03952 638 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 TRAV12-3A0A0B4J271 114 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 IGHV4-39P01824 125 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 ADAD2Q8NCV1 583 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 CHST5Q9GZS9 411 aa12.12□□□□□ -0.47
CCDC88A-201ENST00000263630 RGP1Q92546 391 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 LRRC61Q9BV99 259 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 CISD1Q9NZ45 108 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 MUC1P15941 1255 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 VEGFBP49765 207 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 TDHQ8IZJ6 230 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 SOCS1O15524 211 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 GPR6P46095 362 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 OVOL2Q9BRP0 275 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 HILPDAQ9Y5L2 63 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 CADP27708 2225 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 IGF2P01344 180 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 THY1P04216 161 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 TOGARAM1Q9Y4F4 1720 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 SOX8P57073 446 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 C5orf30Q96GV9 206 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 PCSK4Q6UW60 755 aa12.11□□□□□ -0.47
CCDC88A-201ENST00000263630 CLDN14O95500 239 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 PAX1P15863 534 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 TMEM30BQ3MIR4 351 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 SDF2L1Q9HCN8 221 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 FOCADQ5VW36 1801 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 FAM90A26D6RGX4 464 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 CTAG1AP78358 180 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 UNQ5815/PRO19632Q6UWF5 114 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 C8orf88P0DMB2 117 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 REG1BP48304 166 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 TDGF1P3P51864 188 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 KDM3BQ7LBC6 1761 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 SPTBN1Q01082 2364 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 IGHV3OR15-7A0A075B7D8 119 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 PIGYQ3MUY2 71 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 UCP3P55916 312 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 MRPL24Q96A35 216 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 ELOVL5Q9NYP7 299 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 C21orf140B9A014 251 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 HAX1O00165 279 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 GCM2O75603 506 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 CA7P43166 264 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 ATP5IP56385 69 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 ATXN8Q156A1 80 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 CXorf51AA0A1B0GTR3 108 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 HOXD4P09016 255 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 FCARP24071 287 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 MS4A3Q96HJ5 214 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 SLC25A53Q5H9E4 307 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 Q6AWC8 147 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms