RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 PPP1CBP62140 327 aa13.02□□□□□ -0.32
DDX55-201ENST00000238146 SPATA46Q5T0L3 261 aa13.02□□□□□ -0.32
DDX55-201ENST00000238146 FAM53AQ6NSI3 398 aaPredicted RBP13.02□□□□□ -0.32
DDX55-201ENST00000238146 NUFIP2Q7Z417 695 aaKnown RBP13.02□□□□□ -0.32
DDX55-201ENST00000238146 KIR2DL5AQ8N109 375 aa13.02□□□□□ -0.32
DDX55-201ENST00000238146 ZNF645Q8N7E2 425 aa13.02□□□□□ -0.32
DDX55-201ENST00000238146 DERL1Q9BUN8 251 aa13.02□□□□□ -0.32
DDX55-201ENST00000238146 NAGKQ9UJ70 344 aa13.02□□□□□ -0.32
DDX55-201ENST00000238146 C1QTNF9P0C862 333 aa13.02□□□□□ -0.33
DDX55-201ENST00000238146 GCH1P30793 250 aa13.02□□□□□ -0.33
DDX55-201ENST00000238146 ATP5G3P48201 142 aa13.02□□□□□ -0.33
DDX55-201ENST00000238146 ERVK11-1P61568 191 aa13.02□□□□□ -0.33
DDX55-201ENST00000238146 SPINK14Q6IE38 97 aa13.02□□□□□ -0.33
DDX55-201ENST00000238146 THOC3Q96J01 351 aaKnown RBP13.02□□□□□ -0.33
DDX55-201ENST00000238146 OR2D2Q9H210 308 aa13.02□□□□□ -0.33
DDX55-201ENST00000238146 TMEM210A6NLX4 147 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 NDUFB4O95168 129 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 G0S2P27469 103 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 CLDN18P56856 261 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 FOXL1Q12952 345 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 ZNF808Q8N4W9 903 aaPredicted RBP13.01□□□□□ -0.33
DDX55-201ENST00000238146 Q8N7P7 452 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 ZNF114Q8NC26 417 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 IMMP2LQ96T52 175 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 PGPEP1LA6NFU8 196 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 PDE6DO43924 150 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 RAB4AP20338 218 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 UBE2G2P60604 165 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 EIF4EBP1Q13541 118 aaPredicted RBP13.01□□□□□ -0.33
DDX55-201ENST00000238146 SPINK9Q5DT21 86 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 GCSAMLQ5JQS6 135 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 SCCPDHQ8NBX0 429 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 APH1AQ96BI3 265 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 TMEM68Q96MH6 324 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 MS4A10Q96PG2 267 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 VPS13AQ96RL7 3174 aa13.01□□□□□ -0.33
DDX55-201ENST00000238146 C17orf98A8MV24 154 aa13□□□□□ -0.33
DDX55-201ENST00000238146 MT-CO3P00414 261 aa13□□□□□ -0.33
DDX55-201ENST00000238146 TDGF1P3P51864 188 aa13□□□□□ -0.33
DDX55-201ENST00000238146 ZBTB34Q8NCN2 500 aa13□□□□□ -0.33
DDX55-201ENST00000238146 DIRC2Q96SL1 478 aa13□□□□□ -0.33
DDX55-201ENST00000238146 C17orf112F2Z3M2 114 aa13□□□□□ -0.33
DDX55-201ENST00000238146 NTN3O00634 580 aaPredicted RBP13□□□□□ -0.33
DDX55-201ENST00000238146 BTF3P20290 206 aaKnown RBP13□□□□□ -0.33
DDX55-201ENST00000238146 OR10J1P30954 320 aa13□□□□□ -0.33
DDX55-201ENST00000238146 SOX8P57073 446 aa13□□□□□ -0.33
DDX55-201ENST00000238146 CST9LP1Q5W188 147 aa13□□□□□ -0.33
DDX55-201ENST00000238146 SGMS2Q8NHU3 365 aa13□□□□□ -0.33
DDX55-201ENST00000238146 BTF3L4Q96K17 158 aa13□□□□□ -0.33
DDX55-201ENST00000238146 IER2Q9BTL4 223 aa13□□□□□ -0.33
DDX55-201ENST00000238146 ELOVL5Q9NYP7 299 aa13□□□□□ -0.33
DDX55-201ENST00000238146 TRAV38-1A0A0B4J264 116 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 IGHV3-64DA0A0J9YX35 117 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 RBFOX2O43251 390 aaKnown RBP eCLIP12.99□□□□□ -0.33
DDX55-201ENST00000238146 OR3A1P47881 315 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 TCF23Q7RTU1 214 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 CIB3Q96Q77 187 aaPredicted RBP12.99□□□□□ -0.33
DDX55-201ENST00000238146 RTL8AQ9BWD3 113 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 BOKQ9UMX3 212 aaPredicted RBP12.99□□□□□ -0.33
DDX55-201ENST00000238146 FAM186AA6NE01 2351 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 CDIPTO14735 213 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 IGHEP01854 428 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 SERPINA7P05543 415 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 CD82P27701 267 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 ZNF146Q15072 292 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 Q8IYB0 196 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 HLA-CQ95604 372 aa12.99□□□□□ -0.33
DDX55-201ENST00000238146 SH2D1BO14796 132 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 NXPH2O95156 264 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 TRA2AQ13595 282 aaKnown RBP eCLIP12.98□□□□□ -0.33
DDX55-201ENST00000238146 OR52L2PQ8NGH6 319 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 GALMQ96C23 342 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 SFRP2Q96HF1 295 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 TBX15Q96SF7 602 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 ZNF703Q9H7S9 590 aaPredicted RBP12.98□□□□□ -0.33
DDX55-201ENST00000238146 KCNIP2Q9NS61 270 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 CACNA1DQ01668 2161 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 FRYQ5TBA9 3013 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 TRBV20OR9-2A0A075B6H5 130 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 A0A1B0GWJ7 208 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 C12orf77C9JDV5 145 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 RAB29O14966 203 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 SOX15O60248 233 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 PSPNO60542 156 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 RBMXL2O75526 392 aaKnown RBP12.98□□□□□ -0.33
DDX55-201ENST00000238146 CLDN14O95500 239 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 RAC2P15153 192 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 CD33P20138 364 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 ADMP35318 185 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 CEBPDP49716 269 aaPredicted RBP12.98□□□□□ -0.33
DDX55-201ENST00000238146 CATR1Q13166 79 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 BTNL3Q6UXE8 466 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 GP6Q9HCN6 339 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 KCNIP1Q9NZI2 227 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 POLDIP2Q9Y2S7 368 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 DOCK10Q96BY6 2186 aa12.98□□□□□ -0.33
DDX55-201ENST00000238146 ZNF705FA8MVS1 300 aaPredicted RBP12.97□□□□□ -0.33
DDX55-201ENST00000238146 ZNF705DP0CH99 300 aaPredicted RBP12.97□□□□□ -0.33
DDX55-201ENST00000238146 ZNF705BP0CI00 300 aaPredicted RBP12.97□□□□□ -0.33
DDX55-201ENST00000238146 RPL29P47914 159 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms