RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 C12orf77C9JDV5 145 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 NPIPB11E5RHQ5 1161 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 NUPR1O60356 82 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 CD33P20138 364 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 ATP5G3P48201 142 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 TAS2R60P59551 318 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 SSPNQ14714 243 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 CST9LP1Q5W188 147 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 MRPL41Q8IXM3 137 aaKnown RBP11.77□□□□□ -0.53
USH1C-201ENST00000005226 ZNF114Q8NC26 417 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 OR10P1Q8NGE3 313 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 DTD1Q8TEA8 209 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 NPCDR1Q9BY65 106 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 LOXL2Q9Y4K0 774 aa11.77□□□□□ -0.53
USH1C-201ENST00000005226 C11orf94C9JXX5 98 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 EREGO14944 169 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 TRA2AQ13595 282 aaKnown RBP eCLIP11.76□□□□□ -0.53
USH1C-201ENST00000005226 OR1C1Q15619 314 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 ACSF3Q4G176 576 aaPredicted RBP11.76□□□□□ -0.53
USH1C-201ENST00000005226 TMEM256Q8N2U0 113 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 MRGPRDQ8TDS7 321 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 TMEM170AQ8WVE7 144 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 SDSLQ96GA7 329 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 TMEM147Q9BVK8 224 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 ACTR3CQ9C0K3 210 aaPredicted RBP11.76□□□□□ -0.53
USH1C-201ENST00000005226 DEFB127Q9H1M4 99 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 A0A0U1RQK1 487 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 C1QTNF9P0C862 333 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 EDDM3BP56851 147 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 SSTP61278 116 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 DNLZQ5SXM8 178 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 ABHD17BQ5VST6 288 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 CENPVQ7Z7K6 275 aaPredicted RBP11.76□□□□□ -0.53
USH1C-201ENST00000005226 NEIL1Q96FI4 390 aaPredicted RBP11.76□□□□□ -0.53
USH1C-201ENST00000005226 DCTN5Q9BTE1 182 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 RTL8AQ9BWD3 113 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 PATZ1Q9HBE1 687 aaKnown RBP11.76□□□□□ -0.53
USH1C-201ENST00000005226 OR6C3Q9NZP0 311 aa11.76□□□□□ -0.53
USH1C-201ENST00000005226 TMEM250H0YL14 139 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 MKRN2OSH3BPM6 223 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 NDUFB4O95168 129 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 IGHV3-13P01766 116 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 IGHV3-7P01780 117 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 IGHEP01854 428 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 ERVK11-1P61568 191 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 ACTL10Q5JWF8 245 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 Q6ZR03 302 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 TCF23Q7RTU1 214 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 RNASEH2CQ8TDP1 164 aaKnown RBP11.75□□□□□ -0.53
USH1C-201ENST00000005226 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.75□□□□□ -0.53
USH1C-201ENST00000005226 MBNL3Q9NUK0 354 aaKnown RBP11.75□□□□□ -0.53
USH1C-201ENST00000005226 ZNF320A2RRD8 509 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 B4E171 279 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 SH2D1BO14796 132 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 PAX1P15863 534 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 COX5AP20674 150 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 HOXA6P31267 233 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 TSPAN7P41732 249 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 GNB1P62873 340 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 ZNF709Q8N972 641 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 DDA1Q9BW61 102 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 METRNQ9UJH8 293 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 TIMM9Q9Y5J7 89 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 LOC400499M0QZD8 3231 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 ASPMQ8IZT6 3477 aa11.75□□□□□ -0.53
USH1C-201ENST00000005226 LINC00473A8K010 186 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 HAND1O96004 215 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 HBZP02008 142 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 IL3RAP26951 378 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 TGIF2LYQ8IUE0 185 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 ZNF645Q8N7E2 425 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 PARD6GQ9BYG4 376 aaPredicted RBP11.74□□□□□ -0.53
USH1C-201ENST00000005226 GP6Q9HCN6 339 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 KCNIP1Q9NZI2 227 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 WIPI2Q9Y4P8 454 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 NCOR1O75376 2440 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 WNT2P09544 360 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 SSTR5P35346 364 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 MSMO1Q15800 293 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 TEX38Q6PEX7 206 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 MOB1BQ7L9L4 216 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 BCL2L2Q92843 193 aaPredicted RBP11.74□□□□□ -0.53
USH1C-201ENST00000005226 GALMQ96C23 342 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 FAM234AQ9H0X4 552 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 B4GALT7Q9UBV7 327 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 FZR1Q9UM11 496 aa11.74□□□□□ -0.53
USH1C-201ENST00000005226 ST8SIA5O15466 376 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 SCGB1D1O95968 90 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 P0C879 139 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 RAC2P15153 192 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 DUSP3P51452 185 aaPredicted RBP11.73□□□□□ -0.53
USH1C-201ENST00000005226 Q3ZCU0 254 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 COA6Q5JTJ3 125 aaKnown RBP11.73□□□□□ -0.53
USH1C-201ENST00000005226 H2BFWTQ7Z2G1 175 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 SLC25A40Q8TBP6 338 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 NDUFAF3Q9BU61 184 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 QTRT1Q9BXR0 403 aaKnown RBP11.73□□□□□ -0.53
USH1C-201ENST00000005226 FAM90A26D6RGX4 464 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 GGCTO75223 188 aaKnown RBP11.73□□□□□ -0.53
USH1C-201ENST00000005226 GABRA2P47869 451 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms