RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF251Q9BRH9 671 aa15.07■□□□□ 0
CLN3-254ENST00000637050 TMEM133Q9H2Q1 129 aa15.07■□□□□ 0
CLN3-254ENST00000637050 SAA2-SAA4A0A096LPE2 208 aa15.06■□□□□ 0
CLN3-254ENST00000637050 C13orf42A0A1B0GVH6 325 aa15.06■□□□□ 0
CLN3-254ENST00000637050 MPTX1A8MV57 137 aa15.06■□□□□ 0
CLN3-254ENST00000637050 SAA2P0DJI9 122 aaPredicted RBP15.06■□□□□ 0
CLN3-254ENST00000637050 RPL39P5Q59GN2 51 aa15.06■□□□□ 0
CLN3-254ENST00000637050 TMEM268Q5VZI3 342 aa15.06■□□□□ 0
CLN3-254ENST00000637050 GGNBP1Q5YKI7 109 aa15.06■□□□□ 0
CLN3-254ENST00000637050 C1orf229Q6ZS94 237 aaPredicted RBP15.06■□□□□ 0
CLN3-254ENST00000637050 LYZL2Q7Z4W2 148 aa15.06■□□□□ 0
CLN3-254ENST00000637050 NOXA1Q86UR1 476 aa15.06■□□□□ 0
CLN3-254ENST00000637050 ZNF695Q8IW36 515 aa15.06■□□□□ 0
CLN3-254ENST00000637050 LYG1Q8N1E2 194 aa15.06■□□□□ 0
CLN3-254ENST00000637050 SLC35G3Q8N808 338 aa15.06■□□□□ 0
CLN3-254ENST00000637050 SEC22AQ96IW7 307 aa15.06■□□□□ 0
CLN3-254ENST00000637050 OR10C1Q96KK4 312 aa15.06■□□□□ 0
CLN3-254ENST00000637050 PDCD10Q9BUL8 212 aa15.06■□□□□ 0
CLN3-254ENST00000637050 FBN2P35556 2912 aa15.06■□□□□ 0
CLN3-254ENST00000637050 hCG_1809904A0A1W2PP81 198 aa15.06■□□□□ 0
CLN3-254ENST00000637050 A0A1W2PPE2 198 aa15.06■□□□□ 0
CLN3-254ENST00000637050 DUXBA0A1W2PPF3 345 aa15.06■□□□□ 0
CLN3-254ENST00000637050 A0A1W2PR64 198 aa15.06■□□□□ 0
CLN3-254ENST00000637050 A0A1W2PRV1 198 aa15.06■□□□□ 0
CLN3-254ENST00000637050 LINC00473A8K010 186 aa15.06■□□□□ 0
CLN3-254ENST00000637050 J3QR06 171 aa15.06■□□□□ 0
CLN3-254ENST00000637050 IFNA21P01568 189 aa15.06■□□□□ 0
CLN3-254ENST00000637050 SERPINE2P07093 398 aa15.06■□□□□ 0
CLN3-254ENST00000637050 ZNF16P17020 682 aaPredicted RBP15.06■□□□□ 0
CLN3-254ENST00000637050 DUTP33316 252 aaKnown RBP15.06■□□□□ 0
CLN3-254ENST00000637050 GZMKP49863 264 aa15.06■□□□□ 0
CLN3-254ENST00000637050 PAX2Q02962 417 aa15.06■□□□□ 0
CLN3-254ENST00000637050 ZNF585BQ52M93 769 aa15.06■□□□□ 0
CLN3-254ENST00000637050 Q5BKY6 102 aa15.06■□□□□ 0
CLN3-254ENST00000637050 TCTEX1D1Q8N7M0 179 aa15.06■□□□□ 0
CLN3-254ENST00000637050 RBPMSQ93062 196 aaKnown RBP15.06■□□□□ 0
CLN3-254ENST00000637050 RANBP3Q9H6Z4 567 aaPredicted RBP15.06■□□□□ 0
CLN3-254ENST00000637050 FAM212BQ9NTI7 297 aaPredicted RBP15.06■□□□□ 0
CLN3-254ENST00000637050 ONECUT1Q9UBC0 465 aa15.06■□□□□ 0
CLN3-254ENST00000637050 TMED3Q9Y3Q3 217 aa15.06■□□□□ 0
CLN3-254ENST00000637050 CRYBG3Q68DQ2 2970 aa15.06■□□□□ 0
CLN3-254ENST00000637050 IGHV4-30-2A0A087WSY4 118 aa15.05■□□□□ -0
CLN3-254ENST00000637050 M0R1W7 72 aa15.05■□□□□ -0
CLN3-254ENST00000637050 M0R1X1 148 aa15.05■□□□□ -0
CLN3-254ENST00000637050 BRWD1-AS2P59051 145 aa15.05■□□□□ -0
CLN3-254ENST00000637050 CYCSP99999 105 aaKnown RBP15.05■□□□□ -0
CLN3-254ENST00000637050 ABHD12Q8N2K0 398 aa15.05■□□□□ -0
CLN3-254ENST00000637050 Q8N7P7 452 aa15.05■□□□□ -0
CLN3-254ENST00000637050 OR9G1Q8NH87 305 aa15.05■□□□□ -0
CLN3-254ENST00000637050 TCTEX1D2Q8WW35 142 aa15.05■□□□□ -0
CLN3-254ENST00000637050 C2orf50Q96LR7 162 aa15.05■□□□□ -0
CLN3-254ENST00000637050 NMES1Q9C002 83 aa15.05■□□□□ -0
CLN3-254ENST00000637050 ZNRD1Q9P1U0 126 aa15.05■□□□□ -0
CLN3-254ENST00000637050 PIGBOS1A0A0B4J2F0 54 aa15.04■□□□□ -0
CLN3-254ENST00000637050 ENSAO43768 121 aaKnown RBP15.04■□□□□ -0
CLN3-254ENST00000637050 DNASE1P24855 282 aa15.04■□□□□ -0
CLN3-254ENST00000637050 NKX2-5P52952 324 aaPredicted RBP15.04■□□□□ -0
CLN3-254ENST00000637050 LINC00205P59089 165 aa15.04■□□□□ -0
CLN3-254ENST00000637050 KIR3DL3Q8N743 410 aa15.04■□□□□ -0
CLN3-254ENST00000637050 HYLS1Q96M11 299 aa15.04■□□□□ -0
CLN3-254ENST00000637050 BEX4Q9NWD9 120 aaPredicted RBP15.04■□□□□ -0
CLN3-254ENST00000637050 IGHV4-61A0A0C4DH41 118 aa15.03■□□□□ -0
CLN3-254ENST00000637050 IGKV1-39P01597 117 aa15.03■□□□□ -0
CLN3-254ENST00000637050 IGKV1D-39P04432 117 aa15.03■□□□□ -0
CLN3-254ENST00000637050 RPA2P15927 270 aa15.03■□□□□ -0
CLN3-254ENST00000637050 ARF6P62330 175 aa15.03■□□□□ -0
CLN3-254ENST00000637050 LCN2P80188 198 aa15.03■□□□□ -0
CLN3-254ENST00000637050 IL15RAQ13261 267 aa15.03■□□□□ -0
CLN3-254ENST00000637050 NCR3LG1Q68D85 454 aa15.03■□□□□ -0
CLN3-254ENST00000637050 HIST2H2BCQ6DN03 193 aa15.03■□□□□ -0
CLN3-254ENST00000637050 C1orf122Q6ZSJ8 110 aa15.03■□□□□ -0
CLN3-254ENST00000637050 OR11H4Q8NGC9 324 aa15.03■□□□□ -0
CLN3-254ENST00000637050 TNFRSF14Q92956 283 aa15.03■□□□□ -0
CLN3-254ENST00000637050 POLR3KQ9Y2Y1 108 aaPredicted RBP15.03■□□□□ -0
CLN3-254ENST00000637050 IGHV2-26A0A0B4J1V2 119 aa15.03■□□□□ -0
CLN3-254ENST00000637050 FOXH1O75593 365 aa15.03■□□□□ -0
CLN3-254ENST00000637050 IAH1Q2TAA2 248 aaPredicted RBP15.03■□□□□ -0
CLN3-254ENST00000637050 ZNF833PQ6ZTB9 187 aa15.03■□□□□ -0
CLN3-254ENST00000637050 SPAG16Q8N0X2 631 aa15.03■□□□□ -0
CLN3-254ENST00000637050 DDB2Q92466 427 aa15.03■□□□□ -0
CLN3-254ENST00000637050 S1PR3Q99500 378 aa15.03■□□□□ -0
CLN3-254ENST00000637050 IGHV2-70DA0A0C4DH43 119 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 RAMP3O60896 148 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 IGLV1-47P01700 117 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 VDAC1P21796 283 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 LPAR6P43657 344 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 ZNF137PP52743 207 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 DLX1P56177 255 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 NMSQ5H8A3 153 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 OR2B11Q5JQS5 317 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 LRRC75A-AS1Q8N1F1 130 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 OR10X1Q8NGY0 326 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 CD300LFQ8TDQ1 290 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 PPP1R1CQ8WVI7 109 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 ADTRPQ96IZ2 230 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 CLEC7AQ9BXN2 247 aa15.02□□□□□ -0.01
CLN3-254ENST00000637050 TRAV14DV4A0A0A6YYC5 116 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 PRTN3P24158 256 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 THBS3P49746 956 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 FGL1Q08830 312 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms