RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DCUN1D4Q92564 292 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 HEXA-AS1Q9H8Q6 139 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 GAB2Q9UQC2 676 aa13.85□□□□□ -0.19
CLN3-252ENST00000636907 KMT2BQ9UMN6 2715 aaPredicted RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 YLPM1P49750 1951 aaKnown RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 RNF222A6NCQ9 220 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 GPR37O15354 613 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 KCNAB3O43448 404 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 MBPP02686 304 aaPredicted RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 LPAR6P43657 344 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 GPR6P46095 362 aaPredicted RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 AP2S1P53680 142 aaPredicted RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 SLC25A48Q6ZT89 311 aaKnown RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 OR4D5Q8NGN0 318 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 OR1S1Q8NH92 325 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 SPIN2AQ99865 258 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 SPIN2BQ9BPZ2 258 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 NARFLQ9H6Q4 476 aa13.84□□□□□ -0.19
CLN3-252ENST00000636907 LSM5Q9Y4Y9 91 aaKnown RBP13.84□□□□□ -0.19
CLN3-252ENST00000636907 USF3Q68DE3 2245 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 SAA2-SAA4A0A096LPE2 208 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 PIGBOS1A0A0B4J2F0 54 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 CLEC18AA5D8T8 446 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 M0R1X1 148 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 IGKV1-5P01602 117 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 PET100P0DJ07 73 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 SAA2P0DJI9 122 aaPredicted RBP13.83□□□□□ -0.2
CLN3-252ENST00000636907 S100A11P31949 105 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 ZNF816Q0VGE8 651 aaPredicted RBP13.83□□□□□ -0.2
CLN3-252ENST00000636907 NCR3LG1Q68D85 454 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 SPAG16Q8N0X2 631 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 LYG1Q8N1E2 194 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 CLEC18CQ8NCF0 446 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 GPR146Q96CH1 333 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 ARL6Q9H0F7 186 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 PATZ1Q9HBE1 687 aaKnown RBP13.83□□□□□ -0.2
CLN3-252ENST00000636907 COL12A1Q99715 3063 aa13.83□□□□□ -0.2
CLN3-252ENST00000636907 SPTAN1Q13813 2472 aaKnown RBP13.83□□□□□ -0.2
CLN3-252ENST00000636907 A1L4Q6 167 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 K7EPK0 472 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 ESCO2Q56NI9 601 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 THOC7Q6I9Y2 204 aaKnown RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 ACOT7LQ6ZUV0 252 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 FAM71E2Q8N5Q1 922 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 C11orf42Q8N5U0 333 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 TCTEX1D1Q8N7M0 179 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 RNASE11Q8TAA1 199 aaKnown RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 LSM10Q969L4 123 aaKnown RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 RRNAD1Q96FB5 475 aaKnown RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 ZNF251Q9BRH9 671 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 ZNRD1Q9P1U0 126 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 F5H0A9 414 aaPredicted RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 RAB29O14966 203 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 DEDDO75618 318 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 OR2F2O95006 317 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 S1PR2O95136 353 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 C4BPBP20851 252 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 EPHA1P21709 976 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 AKR1C2P52895 323 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 OR2F1Q13607 317 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 ZNF345Q14585 488 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 KCNRGQ8N5I3 272 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 INO80EQ8NBZ0 244 aaPredicted RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 RAB39BQ96DA2 213 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 CCL19Q99731 98 aa13.82□□□□□ -0.2
CLN3-252ENST00000636907 FAM212BQ9NTI7 297 aaPredicted RBP13.82□□□□□ -0.2
CLN3-252ENST00000636907 PPIAL4CA0A0B4J2A2 164 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 A0A0D9SG52 128 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 IGHV4-39P01824 125 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 PPIAL4GP0DN37 164 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 IGHV1-8P0DP01 117 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 SMCO1Q147U7 214 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 IZUMO4Q1ZYL8 232 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 ZNF525Q8N782 197 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 C8orf46Q8TAG6 207 aa13.81□□□□□ -0.2
CLN3-252ENST00000636907 MSGN1A6NI15 193 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 C22orf46C9J442 243 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 ST8SIA3O43173 380 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 RLN2P04090 185 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 GNB2P62879 340 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 SP5Q6BEB4 398 aaPredicted RBP13.8□□□□□ -0.2
CLN3-252ENST00000636907 Q6ZRM9 215 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 ZFP57Q9NU63 452 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 POMT1Q9Y6A1 747 aa13.8□□□□□ -0.2
CLN3-252ENST00000636907 A0A087X0M5 115 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 A0A1B0GU03 582 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 A0A1B0GX30 115 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 FCGR3BO75015 233 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 PITX3O75364 302 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 SLC25A6P12236 298 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 COX6B1P14854 86 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 NKX2-1P43699 371 aaPredicted RBP13.79□□□□□ -0.2
CLN3-252ENST00000636907 CXorf66Q5JRM2 361 aaPredicted RBP13.79□□□□□ -0.2
CLN3-252ENST00000636907 OR8H1Q8NGG4 311 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 CD300LFQ8TDQ1 290 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 DDB2Q92466 427 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 CACNG5Q9UF02 275 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 RCL1Q9Y2P8 373 aaKnown RBP13.79□□□□□ -0.2
CLN3-252ENST00000636907 SESN1Q9Y6P5 492 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms