RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 GFOD1Q9NXC2 390 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 COQ3Q9NZJ6 369 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 MEX3AA1L020 520 aaKnown RBP18.28■□□□□ 0.52
PNKP-220ENST00000627232 RAB29O14966 203 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 TXNL1O43396 289 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 CLDN14O95500 239 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 SFTPCP11686 197 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 APOBEC3AP31941 199 aaPredicted RBP18.28■□□□□ 0.52
PNKP-220ENST00000627232 ZNF816Q0VGE8 651 aaPredicted RBP18.28■□□□□ 0.52
PNKP-220ENST00000627232 PJVKQ0ZLH3 352 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 TUSC1Q2TAM9 212 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 STX12Q86Y82 276 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 LRRC46Q96FV0 321 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 RP1L1Q8IWN7 2480 aaPredicted RBP18.27■□□□□ 0.52
PNKP-220ENST00000627232 LINC00473A8K010 186 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 TMEM178BH3BS89 294 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 S1PR2O95136 353 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 C1QTNF9P0C862 333 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 DANCRP0C864 163 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 DUTP33316 252 aaKnown RBP18.27■□□□□ 0.51
PNKP-220ENST00000627232 SULT1A1P50225 295 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 DYNLT3P51808 116 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 DUX4L9Q6RFH8 374 aaPredicted RBP18.27■□□□□ 0.51
PNKP-220ENST00000627232 TGIF2LYQ8IUE0 185 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 OR5C1Q8NGR4 320 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 DCAF16Q9NXF7 216 aa18.27■□□□□ 0.51
PNKP-220ENST00000627232 DSPP15924 2871 aaKnown RBP18.26■□□□□ 0.51
PNKP-220ENST00000627232 PPIAL4EA0A075B759 164 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.26■□□□□ 0.51
PNKP-220ENST00000627232 FAM90A27PA6NNH2 459 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 B9A039 149 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 PPIAL4DF5H284 164 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 PPIAL4FP0DN26 164 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 OMGP23515 440 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 MIDNQ504T8 468 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 BTNL8Q6UX41 500 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 FAM216BQ8N7L0 139 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 ZNF436-AS1Q8NC38 126 aaPredicted RBP18.26■□□□□ 0.51
PNKP-220ENST00000627232 BPIFCQ8NFQ6 507 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 IFI27L2Q9H2X8 130 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 DYNLRB1Q9NP97 96 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 CTNNBIP1Q9NSA3 81 aaPredicted RBP18.26■□□□□ 0.51
PNKP-220ENST00000627232 STRAPQ9Y3F4 350 aaKnown RBP18.26■□□□□ 0.51
PNKP-220ENST00000627232 PPIAL4AQ9Y536 164 aa18.26■□□□□ 0.51
PNKP-220ENST00000627232 CST7O76096 145 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 CRYZL1O95825 349 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 G6PCP35575 357 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 F2RL1P55085 397 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 CLINT1Q14677 625 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 OR2B11Q5JQS5 317 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 TCF23Q7RTU1 214 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 LYPD6BQ8NI32 183 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 ATP5SQ99766 215 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 PRORYQ9H606 182 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 IDI2-AS1Q9NZ38 188 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 PSENENQ9NZ42 101 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 HSPB7Q9UBY9 170 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 CEP295Q9C0D2 2601 aa18.25■□□□□ 0.51
PNKP-220ENST00000627232 BOD1L1Q8NFC6 3051 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 hADV38S2A0JD32 116 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 RBFOX2O43251 390 aaKnown RBP eCLIP18.24■□□□□ 0.511e-6■■■■□ 23.3
PNKP-220ENST00000627232 PROP1O75360 226 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 DFFBO76075 338 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 KRASP01116 189 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 KIR2DS2P43631 304 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 ADORA2A-AS1P86434 159 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 MEF2CQ06413 473 aaPredicted RBP18.24■□□□□ 0.51
PNKP-220ENST00000627232 TNFRSF9Q07011 255 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 Q6ZRG5 221 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 ZCCHC24Q8N2G6 241 aaKnown RBP18.24■□□□□ 0.51
PNKP-220ENST00000627232 HSD17B11Q8NBQ5 300 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 NEUROG1Q92886 237 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 TSNAXQ99598 290 aaKnown RBP18.24■□□□□ 0.51
PNKP-220ENST00000627232 ABHD14AQ9BUJ0 271 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 HRH4Q9H3N8 390 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 NARFLQ9H6Q4 476 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 KCNJ16Q9NPI9 418 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 TMEM106BQ9NUM4 274 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 CACFD1Q9UGQ2 172 aa18.24■□□□□ 0.51
PNKP-220ENST00000627232 ZNF134P52741 427 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 NCR3LG1Q68D85 454 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 H2BFWTQ7Z2G1 175 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 OR10A7Q8NGE5 316 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 LINC01560Q8TB33 94 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 GNPNAT1Q96EK6 184 aaPredicted RBP18.23■□□□□ 0.51
PNKP-220ENST00000627232 LINC00312Q9Y6C7 94 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 PCNX1Q96RV3 2341 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 DCHS1Q96JQ0 3298 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 ICE1Q9Y2F5 2266 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 TRIM77I1YAP6 450 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 M0R1X1 148 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 TNFRSF13BO14836 293 aaPredicted RBP18.23■□□□□ 0.51
PNKP-220ENST00000627232 HPRT1P00492 218 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 ARHGDIBP52566 201 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 UBE2KP61086 200 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 ZNF439Q8NDP4 499 aa18.23■□□□□ 0.51
PNKP-220ENST00000627232 ZCCHC14Q8WYQ9 949 aaKnown RBP18.23■□□□□ 0.51
PNKP-220ENST00000627232 DMXL2Q8TDJ6 3036 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 FAM90A9PA6NNJ1 464 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 TMPRSS2O15393 492 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms