RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TMEM155Q4W5P6 130 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 C10orf126Q8N4M7 172 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 IGHV3OR15-7A0A075B7D8 119 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 HOXC4P09017 264 aaPredicted RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM187Q14656 261 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM70Q9BUB7 260 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 APOMO95445 188 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TDGF1P13385 188 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CSN1S1P47710 185 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 ZNF595Q8IYB9 648 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 PRSS27Q9BQR3 290 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 MYOZ1Q9NP98 299 aaPredicted RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 PILRBQ9UKJ0 227 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 HMGA1P17096 107 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CRYBB3P26998 211 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 RPL8P62917 257 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CEACAM16Q2WEN9 425 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CRYM-AS1A6NIL9 109 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 MKRN2OSH3BPM6 223 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TSPOP30536 169 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 KISS1RQ969F8 398 aaPredicted RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 FOXC2Q99958 501 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 A0A1B0GUL6 1792 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 FAM181BA6NEQ2 426 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 RIPPLY2Q5TAB7 128 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 ASPHD2Q6ICH7 369 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 OR5A1Q8NGJ0 315 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 LSM10Q969L4 123 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 ATP23Q9Y6H3 246 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 LRRC37A3O60309 1634 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 DMWDQ09019 674 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 ZNF818PQ6ZRF7 136 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 FER1L6-AS1Q8NA97 138 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM106BQ9NUM4 274 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 RAC1P63000 192 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 NOGQ13253 232 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 OR8G5Q8NG78 346 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 MBD3L1Q8WWY6 194 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 LEAP2Q969E1 77 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 OXGR1Q96P68 337 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM222Q9H0R3 208 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 GEMIN7Q9H840 131 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 NHP2Q9NX24 153 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 HS3ST2Q9Y278 367 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 SCN2AQ99250 2005 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TRAV12-3A0A0B4J271 114 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 RPL23P62829 140 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 PSG9Q00887 426 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 C17orf67Q0P5P2 114 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CENPWQ5EE01 88 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 TRBV5-5A0A0J9YX44 114 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 MANSC4A6NHS7 340 aaPredicted RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CD160O95971 181 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 SP1P08047 785 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 ACTL10Q5JWF8 245 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 PET117Q6UWS5 81 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 CYC1P08574 325 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 GNG5P63218 68 aa4.35□□□□□ -1.71
VPS13D-214ENST00000620676 DDX60LQ5H9U9 1706 aaKnown RBP4.35□□□□□ -1.71
VPS13D-214ENST00000620676 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 SH2D7A6NKC9 451 aaPredicted RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 F2Z2F3 143 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 C3orf80F5H4A9 247 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 K7EMI3 77 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 HLA-DRB1P01911 266 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 PMELP40967 661 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 C3AR1Q16581 482 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 M0R3E3 92 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 LOXL3P58215 753 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 MC5RP33032 325 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 NOXO1Q8NFA2 376 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 FER1L6-AS2Q96M78 137 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 PPIHO43447 177 aaKnown RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 OPRK1P41145 380 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 GPR3P46089 330 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 CDKN1BP46527 198 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 TIMM23BQ5SRD1 257 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 UNQ9370/PRO34162Q6UXP9 181 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 DEPPQ9NTK1 212 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 ZNF257Q9Y2Q1 563 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 UPK3AO75631 287 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 LINC00869P0C866 280 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 IL3RAP26951 378 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 KIR3DS1Q14943 382 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 WDR81Q562E7 1941 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 ANKRD37Q7Z713 158 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 ZNF414Q96IQ9 312 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 RSPO3Q9BXY4 272 aaPredicted RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 FBXL7Q9UJT9 491 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 PPIFP30405 207 aaKnown RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 KLHDC3Q9BQ90 382 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 GALMQ96C23 342 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 COL25A1Q9BXS0 654 aaPredicted RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 RGPD3A6NKT7 1758 aaPredicted RBP4.34□□□□□ -1.71
VPS13D-214ENST00000620676 RGPD4Q7Z3J3 1758 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 STAG3L3P0CL85 134 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 RNF144BQ7Z419 303 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 SFTPA2Q8IWL1 248 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 TMEM52Q8NDY8 209 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 CACNA1AO00555 2505 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 262.2 ms