RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PAK1IP1Q9NWT1 392 aaPredicted RBP3.17□□□□□ -1.9
LINC00540-201ENST00000611481 MLXQ9UH92 298 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 DCDC2Q9UHG0 476 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 LINC00527Q9UJ94 153 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 FBXO7Q9Y3I1 522 aa3.17□□□□□ -1.9
LINC00540-201ENST00000611481 IGHV4-4A0A075B6R2 117 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF726A6NNF4 738 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 LOC110117498-PIK3R3F6TDL0 507 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 G3V2L1 256 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 DCTN6O00399 190 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 CCRL2O00421 344 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 OVOL1O14753 267 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 NXPH4O95158 308 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 CNIH1O95406 144 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 LALBAP00709 142 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 IGHG1P01857 330 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 HMGN2P05204 90 aaKnown RBP3.16□□□□□ -1.9
LINC00540-201ENST00000611481 OR8U8P0C7N1 319 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 MLNP12872 115 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 KDELR2P33947 212 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 MAGEA6P43360 314 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 CSNK1A1P48729 337 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 MAGOHP61326 146 aaKnown RBP3.16□□□□□ -1.9
LINC00540-201ENST00000611481 SLC35B1P78383 322 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 PUDPQ08623 228 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 CALCOCO2Q13137 446 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF141Q15928 474 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 MAPK14Q16539 360 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 COQ5Q5HYK3 327 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 MUC21Q5SSG8 566 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 LCE3EQ5T5B0 92 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 OR2G6Q5TZ20 316 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 C1orf140Q5VVS0 124 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF57Q68EA5 555 aaPredicted RBP3.16□□□□□ -1.9
LINC00540-201ENST00000611481 ANKRD26P1Q6NSI1 321 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 C4orf22Q6V702 233 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 GDPD3Q7L5L3 318 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 SSX6Q7RTT6 188 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 DPPA2Q7Z7J5 298 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 HMGN2P46Q86SG4 172 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 LYG2Q86SG7 212 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 MKXQ8IYA7 352 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 PDIK1LQ8N165 341 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 FAM216BQ8N7L0 139 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 STPG4Q8N801 248 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 BEST4Q8NFU0 473 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 OR5T1Q8NG75 326 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 OR13G1Q8NGZ3 307 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 OR2G2Q8NGZ5 317 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 STAG3L4Q8TBR4 150 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 DUS3LQ96G46 650 aaKnown RBP3.16□□□□□ -1.9
LINC00540-201ENST00000611481 CCL13Q99616 98 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 KCTD14Q9BQ13 255 aaPredicted RBP3.16□□□□□ -1.9
LINC00540-201ENST00000611481 POPDC3Q9HBV1 291 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 CLN6Q9NWW5 311 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 VPS29Q9UBQ0 182 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 TFR2Q9UP52 801 aa3.16□□□□□ -1.9
LINC00540-201ENST00000611481 PKHD1L1Q86WI1 4243 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 LOC100131303A0A0U1RQF7 123 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 A0A1B0GWB2 263 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 CLDN24A6NM45 220 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 LYRM9A8MSI8 78 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 FTCDNL1E5RQL4 147 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 E9PLD3 99 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 NDUFB3O43676 98 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 MPDU1O75352 247 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 BANF1O75531 89 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 RBBP9O75884 186 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 SUPT7LO94864 414 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 OR5F1O95221 314 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 WISP3O95389 354 aaPredicted RBP3.15□□□□□ -1.91
LINC00540-201ENST00000611481 HLA-DPB1P04440 258 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 MMP7P09237 267 aaPredicted RBP3.15□□□□□ -1.91
LINC00540-201ENST00000611481 TFPTP0C1Z6 253 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 PGA5P0DJD9 388 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 GFAPP14136 432 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 TBPP20226 339 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 SLC2A5P22732 501 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 CD24P25063 80 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 MAGEA2P43356 314 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 GPM6AP51674 278 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 MED21Q13503 144 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 MPPED2Q15777 294 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 UAP1Q16222 522 aaPredicted RBP3.15□□□□□ -1.91
LINC00540-201ENST00000611481 SPANXN3Q5MJ09 141 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 OR2T2Q6IF00 324 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 FAM71E1Q6IPT2 247 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 FAHD1Q6P587 224 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 LINC00322Q6ZN03 302 aaPredicted RBP3.15□□□□□ -1.91
LINC00540-201ENST00000611481 BOD1L2Q8IYS8 172 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 LRRC34Q8IZ02 419 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 LYPD1Q8N2G4 141 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 DRAM1Q8N682 238 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF738Q8NE65 137 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 OR1N2Q8NGR9 330 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 OR56B4Q8NH76 319 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF502Q8TBZ5 544 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 ARPC1AQ92747 370 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 CCDC42Q96M95 316 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 SDF2Q99470 211 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 227.1 ms