RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RAC3P60763 192 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 PLPPR2Q96GM1 343 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 WDR54Q9H977 334 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 PAM16Q9Y3D7 125 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 RAMP3O60896 148 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 IL3RAP26951 378 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 OR6C3Q9NZP0 311 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 TECTAO75443 2155 aa15.52■□□□□ 0.07
UPF1-210ENST00000600689 GTF3C1Q12789 2109 aa15.52■□□□□ 0.07
UPF1-210ENST00000600689 LOC102723996A0A087X1L8 192 aa15.52■□□□□ 0.07
UPF1-210ENST00000600689 TRAV24A0A0B4J272 114 aa15.52■□□□□ 0.07
UPF1-210ENST00000600689 TRAV38-1A0A0B4J264 116 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 DUXBA0A1W2PPF3 345 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 ZNF716A6NP11 495 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 ATP5G3P48201 142 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 SERF2P84101 59 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 ZNF585BQ52M93 769 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 FGFRL1Q8N441 504 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 ZNF503-AS2A6NEH8 195 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 C11orf94C9JXX5 98 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 MBP02144 154 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 NPSP0C0P6 89 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 NPPCP23582 126 aa15.51■□□□□ 0.07
UPF1-210ENST00000600689 LBHQ53QV2 105 aaPredicted RBP15.51■□□□□ 0.07
UPF1-210ENST00000600689 NDUFB4O95168 129 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 PAX1P15863 534 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 CA6P23280 308 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 CEACAM6P40199 344 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 CEBPDP49716 269 aaPredicted RBP15.5■□□□□ 0.07
UPF1-210ENST00000600689 DNLZQ5SXM8 178 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 DBX2Q6ZNG2 339 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 C1orf210Q8IVY1 113 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 ZNF114Q8NC26 417 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 PSMG3Q9BT73 122 aaPredicted RBP15.5■□□□□ 0.07
UPF1-210ENST00000600689 TMEM9BQ9NQ34 198 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 NAGKQ9UJ70 344 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 DEGS1O15121 323 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 TFF1P04155 84 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 FKBP2P26885 142 aaKnown RBP15.5■□□□□ 0.07
UPF1-210ENST00000600689 PCBD1P61457 104 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 ACTL10Q5JWF8 245 aa15.5■□□□□ 0.07
UPF1-210ENST00000600689 PINX1Q96BK5 328 aaKnown RBP15.5■□□□□ 0.07
UPF1-210ENST00000600689 SPINK4O60575 86 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 ZG16O60844 167 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 CBR3O75828 277 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 CTXN2P0C2S0 81 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 TFPI2P48307 235 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 EDDM3BP56851 147 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 DLL3Q9NYJ7 618 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 GDF1P27539 372 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 ERVFC1-1P60608 527 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 GBGT1Q8N5D6 347 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 BEND2Q8NDZ0 799 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 ACY3Q96HD9 319 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 MANBALQ9NQG1 85 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 MRPL33O75394 65 aaKnown RBP15.49■□□□□ 0.07
UPF1-210ENST00000600689 ZNF709Q8N972 641 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 OR1L1Q8NH94 360 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 PYGO2Q9BRQ0 406 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 FAM103A1Q9BTL3 118 aaKnown RBP15.49■□□□□ 0.07
UPF1-210ENST00000600689 PPIAL4AQ9Y536 164 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 BDP1A6H8Y1 2624 aa15.49■□□□□ 0.07
UPF1-210ENST00000600689 P04436 131 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 OTX2P32243 289 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 KCNIP4Q6PIL6 250 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 OR2Y1Q8NGV0 311 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 SGMS2Q8NHU3 365 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 NEIL1Q96FI4 390 aaPredicted RBP15.48■□□□□ 0.07
UPF1-210ENST00000600689 PARD6AQ9NPB6 346 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 CER1O95813 267 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 IGLV2-14P01704 120 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 TDGF1P3P51864 188 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 LTC4SQ16873 150 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 GGNQ86UU5 652 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 FAM58AQ8N1B3 248 aa15.48■□□□□ 0.07
UPF1-210ENST00000600689 IRF2P14316 349 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 PPP1CBP62140 327 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 ACOT6Q3I5F7 207 aaPredicted RBP15.47■□□□□ 0.07
UPF1-210ENST00000600689 CEACAM21Q3KPI0 293 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 CTXND1A0A1B0GTU2 59 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 HPRT1P00492 218 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 BTF3P20290 206 aaKnown RBP15.47■□□□□ 0.07
UPF1-210ENST00000600689 CBLN1P23435 193 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 PEAR1Q5VY43 1037 aaPredicted RBP15.47■□□□□ 0.07
UPF1-210ENST00000600689 TGIF2LYQ8IUE0 185 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 DRAM1Q8N682 238 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 VN1R17PQ8TDU5 208 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 RBM14Q96PK6 669 aaKnown RBP15.47■□□□□ 0.07
UPF1-210ENST00000600689 REPIN1Q9BWE0 567 aaKnown RBP15.47■□□□□ 0.07
UPF1-210ENST00000600689 C1QTNF5Q9BXJ0 243 aa15.47■□□□□ 0.07
UPF1-210ENST00000600689 GJE1A6NN92 205 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 MED12LQ86YW9 2145 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 TMEM208Q9BTX3 173 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 ZDHHC11Q9H8X9 412 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 LOC400499M0QZD8 3231 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 ADMP35318 185 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 TMEM105Q8N8V8 129 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 FAM234AQ9H0X4 552 aa15.46■□□□□ 0.07
UPF1-210ENST00000600689 SERPINA7P05543 415 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 FRMD6-AS1P0C7T7 363 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms