RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 KIAA0141Q14154 515 aaPredicted RBP7.61□□□□□ -1.19
VRK3-216ENST00000599342 ASPHD1Q5U4P2 390 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 PYHIN1Q6K0P9 492 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 FAM89BQ8N5H3 189 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 OR56B1Q8NGI3 324 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 OR5AN1Q8NGI8 311 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 TSNAXQ99598 290 aaKnown RBP7.61□□□□□ -1.19
VRK3-216ENST00000599342 RNF5Q99942 180 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 PARP12Q9H0J9 701 aaKnown RBP7.61□□□□□ -1.19
VRK3-216ENST00000599342 C11orf54Q9H0W9 315 aaPredicted RBP7.61□□□□□ -1.19
VRK3-216ENST00000599342 Q9N2K0 584 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 METTL1Q9UBP6 276 aaKnown RBP7.61□□□□□ -1.19
VRK3-216ENST00000599342 FBXO7Q9Y3I1 522 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 LSM4Q9Y4Z0 139 aaKnown RBP7.61□□□□□ -1.19
VRK3-216ENST00000599342 U3KQK5 164 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 DNAH9Q9NYC9 4486 aa7.61□□□□□ -1.19
VRK3-216ENST00000599342 LINC01619G3V211 115 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 SAP30O75446 220 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 SPDEFO95238 335 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 APOA2P02652 100 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 LGALS1P09382 135 aaKnown RBP7.6□□□□□ -1.19
VRK3-216ENST00000599342 SCTP09683 121 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 PSMD7P51665 324 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 CLDN12P56749 244 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 RPS16P62249 146 aaKnown RBP7.6□□□□□ -1.19
VRK3-216ENST00000599342 TPBGQ13641 420 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 ACTBL2Q562R1 376 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 C19orf54Q5BKX5 351 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 UNQ5815/PRO19632Q6UWF5 114 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 TMEM91Q6ZNR0 172 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 ZNF429Q86V71 674 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 PPP1R27Q86WC6 154 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 PDPNQ86YL7 162 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 DRAXINQ8NBI3 349 aaPredicted RBP7.6□□□□□ -1.19
VRK3-216ENST00000599342 CASTOR1Q8WTX7 329 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 DCUN1D4Q92564 292 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 PTX4Q96A99 478 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 FAM3DQ96BQ1 224 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 ARHGAP5-AS1Q96IT6 56 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 CLCC1Q96S66 551 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 GFI1Q99684 422 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 AGMATQ9BSE5 352 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 FAM103A1Q9BTL3 118 aaKnown RBP7.6□□□□□ -1.19
VRK3-216ENST00000599342 PECRQ9BY49 303 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 TOLLIPQ9H0E2 274 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 ALX4Q9H161 411 aaPredicted RBP7.6□□□□□ -1.19
VRK3-216ENST00000599342 VCX3BQ9H321 246 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 ACOT13Q9NPJ3 140 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 NKX1-2Q9UD57 310 aaPredicted RBP7.6□□□□□ -1.19
VRK3-216ENST00000599342 SMAD5-AS1Q9Y6J3 95 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 V9GY05 133 aa7.6□□□□□ -1.19
VRK3-216ENST00000599342 ERICH4A6NGS2 130 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 FOXI3A8MTJ6 420 aaPredicted RBP7.59□□□□□ -1.19
VRK3-216ENST00000599342 TRDCB7Z8K6 153 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 M0R1X1 148 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 FCN1O00602 326 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 DENRO43583 198 aaKnown RBP7.59□□□□□ -1.19
VRK3-216ENST00000599342 SOX15O60248 233 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 CA2P00918 260 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 TFAP2AP05549 437 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 CD3GP09693 182 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 SERPINB10P48595 397 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 SLURP1P55000 103 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 TMEM50BP56557 158 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 TPPP2P59282 170 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 FABP5Q01469 135 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 PSG5Q15238 335 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 AKIRIN2Q53H80 203 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 HES5Q5TA89 166 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 CD200R1LQ6Q8B3 271 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 ZNF562Q6V9R5 426 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 PRSS48Q7RTY5 328 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 GRPEL2Q8TAA5 225 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 ARPC1AQ92747 370 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 DLX4Q92988 240 aaPredicted RBP7.59□□□□□ -1.19
VRK3-216ENST00000599342 FLYWCH2Q96CP2 140 aaKnown RBP7.59□□□□□ -1.19
VRK3-216ENST00000599342 MGLLQ99685 303 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 DUSP21Q9H596 190 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 SLA2Q9H6Q3 261 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 RDH8Q9NYR8 311 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 NUBP2Q9Y5Y2 271 aa7.59□□□□□ -1.19
VRK3-216ENST00000599342 IGHV4OR15-8A0A075B7B6 117 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 A0A087WW49 117 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 TMEM272A0A1B0GTI8 110 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 PDCD5O14737 125 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 BET1O15155 118 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 IGHV3-11P01762 117 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 IGKV1-16P04430 117 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 HSPB1P04792 205 aaKnown RBP7.58□□□□□ -1.2
VRK3-216ENST00000599342 OR8U9P0C7N5 309 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 EGR2P11161 476 aaPredicted RBP7.58□□□□□ -1.2
VRK3-216ENST00000599342 CRHBPP24387 322 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 GADD45AP24522 165 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 MYL9P24844 172 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 PITPNAQ00169 270 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 CBX3Q13185 183 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 C2orf76Q3KRA6 126 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 PLAC9Q5JTB6 97 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 ZNF383Q8NA42 475 aa7.58□□□□□ -1.2
VRK3-216ENST00000599342 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms