RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TMEM186Q96B77 213 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 GALNT14Q96FL9 552 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 PHB2Q99623 299 aa12.61□□□□□ -0.39
UPF1-206ENST00000598471 YLPM1P49750 1951 aaKnown RBP12.61□□□□□ -0.39
UPF1-206ENST00000598471 SAA2-SAA4A0A096LPE2 208 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 H0Y980 276 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 M0R1X1 148 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 IGLV2-14P01704 120 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 SAA2P0DJI9 122 aaPredicted RBP12.6□□□□□ -0.39
UPF1-206ENST00000598471 MMP9P14780 707 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 F2RP25116 425 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 SLC9A3R2Q15599 337 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 HLA-DRB5Q30154 266 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 C12orf45Q8N5I9 185 aaPredicted RBP12.6□□□□□ -0.39
UPF1-206ENST00000598471 TCTEX1D1Q8N7M0 179 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 WFDC11Q8NEX6 87 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 OR11H6Q8NGC7 330 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 OR52B4Q8NGK2 314 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 OR51H1Q8NH63 302 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 ADTRPQ96IZ2 230 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 MED28Q9H204 178 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 HIF1ANQ9NWT6 349 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 AKAP9Q99996 3911 aa12.6□□□□□ -0.39
UPF1-206ENST00000598471 A0A0B4J2A0 478 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 IGLV1-47P01700 117 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 ARG1P05089 322 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 OR5AC1P0C628 307 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 IGHV4-31P0DP07 118 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 ZNF16P17020 682 aaPredicted RBP12.59□□□□□ -0.39
UPF1-206ENST00000598471 HOXB4P17483 251 aaPredicted RBP12.59□□□□□ -0.39
UPF1-206ENST00000598471 THBS3P49746 956 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 BCAP31P51572 246 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 ZNF137PP52743 207 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 SUPT4H1P63272 117 aaKnown RBP12.59□□□□□ -0.39
UPF1-206ENST00000598471 TMEM249Q2WGJ8 235 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 RPL39P5Q59GN2 51 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 ODF3L1Q8IXM7 274 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 MITD1Q8WV92 249 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 TCTEX1D2Q8WW35 142 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 TBX15Q96SF7 602 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 SHPKQ9UHJ6 478 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 PRELID3BQ9Y3B1 194 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 AUP1Q9Y679 476 aa12.59□□□□□ -0.39
UPF1-206ENST00000598471 J3QLI3 93 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 TXNL1O43396 289 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 TGFAP01135 160 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 SERPINE2P07093 398 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 TRAPPC2P0DI81 140 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 TRAPPC2BP0DI82 140 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 CEACAM3P40198 252 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 KIR2DS2P43631 304 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 LGALS4P56470 323 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 RRAS2P62070 204 aaPredicted RBP12.58□□□□□ -0.4
UPF1-206ENST00000598471 KLRD1Q13241 179 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 ZNF833PQ6ZTB9 187 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 CADM3Q8N126 398 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 LGI3Q8N145 548 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 UXS1Q8NBZ7 420 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 MSI2Q96DH6 328 aaKnown RBP12.58□□□□□ -0.4
UPF1-206ENST00000598471 C5orf30Q96GV9 206 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 ZNRD1Q9P1U0 126 aa12.58□□□□□ -0.4
UPF1-206ENST00000598471 HMX3A6NHT5 357 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 ODF3BA8MYP8 253 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 RNASEK-C17orf49H0YIS7 233 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 BUB1B-PAK6H3BSN5 160 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 HTR1DP28221 377 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 DUTP33316 252 aaKnown RBP12.57□□□□□ -0.4
UPF1-206ENST00000598471 UBE2E1P51965 193 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 DLX1P56177 255 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 TAGLNQ01995 201 aaKnown RBP12.57□□□□□ -0.4
UPF1-206ENST00000598471 PRB3Q04118 309 aaPredicted RBP12.57□□□□□ -0.4
UPF1-206ENST00000598471 EIF4EBP1Q13541 118 aaPredicted RBP12.57□□□□□ -0.4
UPF1-206ENST00000598471 TMEM187Q14656 261 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 CYB5R2Q6BCY4 276 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 LIAT1Q6ZQX7 453 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 TGIF2LXQ8IUE1 241 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 MAPK1IP1LQ8NDC0 245 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 OR4P4Q8NGL7 312 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 CD300LFQ8TDQ1 290 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 LHX4Q969G2 390 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 RPEQ96AT9 228 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 TP53RKQ96S44 253 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 GPHA2Q96T91 129 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 ZNF251Q9BRH9 671 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 TMEM222Q9H0R3 208 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 C7orf69Q9H7B7 122 aa12.57□□□□□ -0.4
UPF1-206ENST00000598471 FAM212BQ9NTI7 297 aaPredicted RBP12.57□□□□□ -0.4
UPF1-206ENST00000598471 LEUTXA8MZ59 168 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 APOA2P02652 100 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 GAPDHP04406 335 aaKnown RBP12.56□□□□□ -0.4
UPF1-206ENST00000598471 RPA2P15927 270 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 EPHA1P21709 976 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 UCP1P25874 307 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 ANKRD55Q3KP44 614 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 SP6Q3SY56 376 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 MINOS1Q5TGZ0 78 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 HCP5Q6MZN7 132 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 LIN54Q6MZP7 749 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 DPM3Q9P2X0 92 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 TBL2Q9Y4P3 447 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms