RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 G6PCP35575 357 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 MDH2P40926 338 aaKnown RBP12.96□□□□□ -0.34
UPF1-204ENST00000596842 HBG1P69891 147 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 HBG2P69892 147 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 PCSK4Q6UW60 755 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 MS4A10Q96PG2 267 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 DEFB127Q9H1M4 99 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 BOKQ9UMX3 212 aaPredicted RBP12.96□□□□□ -0.34
UPF1-204ENST00000596842 BOD1L1Q8NFC6 3051 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 IGHV3-43A0A0B4J1X8 118 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 CTXN2P0C2S0 81 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 OR4A8P0C604 315 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 IGHV3-43DP0DP04 118 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 PMELP40967 661 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 UBE2G2P60604 165 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 ZNF726P1Q15940 193 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 DCAF12Q5T6F0 453 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 HIST1H2BLQ99880 126 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 PRDM14Q9GZV8 571 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 IGHEP01854 428 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 SLC38A11Q08AI6 406 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 TMEM41BQ5BJD5 291 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 FAM90A2PQ658T7 463 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 Q6ZSR3 168 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 NUFIP2Q7Z417 695 aaKnown RBP12.95□□□□□ -0.34
UPF1-204ENST00000596842 HIST3H2BBQ8N257 126 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 TMEM105Q8N8V8 129 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 CT55Q8WUE5 264 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 RAB40CQ96S21 281 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 FKBP11Q9NYL4 201 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 RIPPLY2Q5TAB7 128 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 SLC35E3Q7Z769 313 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 ZNF596Q8TC21 504 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 DIRC2Q96SL1 478 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 C11orf1Q9H5F2 150 aa12.95□□□□□ -0.34
UPF1-204ENST00000596842 ABLIM2Q6H8Q1 611 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 SMIM15Q7Z3B0 74 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 A8MWP6 167 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 IGKV1-39P01597 117 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 IGKV1D-39P04432 117 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 GNG3P63215 75 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 PILRBQ9UKJ0 227 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 FZR1Q9UM11 496 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 FUT9Q9Y231 359 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 IGKV1-5P01602 117 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 C16orf82Q7Z2V1 217 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 ZNF573Q86YE8 665 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 TECTBQ96PL2 329 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 TMEM204Q9BSN7 226 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 SMDT1Q9H4I9 107 aa12.94□□□□□ -0.34
UPF1-204ENST00000596842 ELOA3CA0A087WX78 387 aaPredicted RBP12.93□□□□□ -0.34
UPF1-204ENST00000596842 RAMP3O60896 148 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 H1FOOQ8IZA3 346 aaPredicted RBP12.93□□□□□ -0.34
UPF1-204ENST00000596842 GCNT2Q8N0V5 402 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 SH2D2AQ9NP31 389 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 MT-CO3P00414 261 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 CRYAAP02489 173 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 CHRNA7P36544 502 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 TNFSF10P50591 281 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 KRTDAPP60985 99 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 ZNF324BQ6AW86 544 aaPredicted RBP12.93□□□□□ -0.34
UPF1-204ENST00000596842 TMPRSS7Q7RTY8 843 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 C1QL4Q86Z23 238 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 ZNF525Q8N782 197 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 LOXL2Q9Y4K0 774 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 A0A1B0GU03 582 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 H7BYZ3 331 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 ALKBH6Q3KRA9 238 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 PMS2CLQ68D20 193 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 DPPA3Q6W0C5 159 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 ZNF826PQ6ZT77 177 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 FGFRL1Q8N441 504 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 VN1R17PQ8TDU5 208 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 OR2D2Q9H210 308 aa12.93□□□□□ -0.34
UPF1-204ENST00000596842 ADAMTS20P59510 1910 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 DNPH1O43598 174 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 IFNA1P01562 189 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OR5A2Q8NGI9 324 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 ZDHHC16Q969W1 377 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 RAB29O14966 203 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OR2H2O95918 312 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 CELA3BP08861 270 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 LMO1P25800 156 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 HAPLN4Q86UW8 402 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 ZNF295-AS1Q8N0V1 137 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OR1L6Q8NGR2 347 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 YPEL4Q96NS1 127 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 PCGF1Q9BSM1 259 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 B4GALT7Q9UBV7 327 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 IFNL4K9M1U5 179 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 GALR2O43603 387 aaPredicted RBP12.92□□□□□ -0.34
UPF1-204ENST00000596842 IRF2P14316 349 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 GABRA2P47869 451 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OR2M7Q8NG81 312 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OR2J1Q9GZK6 312 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OBP2BQ9NPH6 170 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 PITPNC1Q9UKF7 332 aa12.92□□□□□ -0.34
UPF1-204ENST00000596842 OR1C1Q15619 314 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 LEMD1Q68G75 181 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 C6orf15Q6UXA7 325 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms