RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 S100GP29377 79 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 RAB25P57735 213 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 SUPT4H1P63272 117 aaKnown RBP13.11□□□□□ -0.31
SS18-211ENST00000578954 PHLDA2Q53GA4 152 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 GLDNQ6ZMI3 551 aaPredicted RBP13.11□□□□□ -0.31
SS18-211ENST00000578954 ZNF66Q6ZN08 573 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 KCTD9Q7L273 389 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 OR10X1Q8NGY0 326 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 CAPSLQ8WWF8 208 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 GALNT14Q96FL9 552 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 HSD17B10Q99714 261 aaKnown RBP13.11□□□□□ -0.31
SS18-211ENST00000578954 C7orf69Q9H7B7 122 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 ITGB1BP2Q9UKP3 347 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 MPPED1O15442 326 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 DUTP33316 252 aaKnown RBP13.1□□□□□ -0.31
SS18-211ENST00000578954 PRB3Q04118 309 aaPredicted RBP13.1□□□□□ -0.31
SS18-211ENST00000578954 KRTAP1-1Q07627 177 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 PPP1R1AQ13522 171 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 TATDN3Q17R31 274 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 RPL39P5Q59GN2 51 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 MINOS1Q5TGZ0 78 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 LYG2Q86SG7 212 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 TBC1D26Q86UD7 250 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 LHX4Q969G2 390 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 S1PR3Q99500 378 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 NAA60Q9H7X0 242 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 TBL2Q9Y4P3 447 aaKnown RBP13.1□□□□□ -0.31
SS18-211ENST00000578954 MINOS1-NBL1R4GNA1 71 aa13.1□□□□□ -0.31
SS18-211ENST00000578954 FLNAP21333 2647 aaKnown RBP13.1□□□□□ -0.31
SS18-211ENST00000578954 CENPVL3A0A0U1RRI6 287 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 SNRPGP15A8MWD9 76 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 B3GALNT1O75752 331 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 SFT2D2O95562 160 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 ARG1P05089 322 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 AKR1C4P17516 323 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 F2RP25116 425 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 HTR1DP28221 377 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 DHRS2Q13268 280 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 MIDNQ504T8 468 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 LDLRAD2Q5SZI1 272 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 SPNS3Q6ZMD2 512 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 SGPP2Q8IWX5 399 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 DDB2Q92466 427 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 BEX2Q9BXY8 128 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 BEX1Q9HBH7 125 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 FAM212BQ9NTI7 297 aaPredicted RBP13.09□□□□□ -0.31
SS18-211ENST00000578954 DPM3Q9P2X0 92 aa13.09□□□□□ -0.31
SS18-211ENST00000578954 C9orf170A2RU37 121 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 RNF212BA8MTL3 300 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 H0Y980 276 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 M0R1X1 148 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 AVPP01185 164 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 FSHBP01225 129 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 RPL30P62888 115 aaKnown RBP13.08□□□□□ -0.32
SS18-211ENST00000578954 ZNF816Q0VGE8 651 aaPredicted RBP13.08□□□□□ -0.32
SS18-211ENST00000578954 CATR1Q13166 79 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 C4orf46Q504U0 113 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 C11orf88Q6PI97 169 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 TCTEX1D1Q8N7M0 179 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 ZNF431Q8TF32 576 aaPredicted RBP13.08□□□□□ -0.32
SS18-211ENST00000578954 ADTRPQ96IZ2 230 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 SEC22CQ9BRL7 303 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 GPN1Q9HCN4 374 aaPredicted RBP13.08□□□□□ -0.32
SS18-211ENST00000578954 ALG5Q9Y673 324 aa13.08□□□□□ -0.32
SS18-211ENST00000578954 CSPG4Q6UVK1 2322 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 TRAV40A0A0B4J280 105 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 IGHV1-69DA0A0B4J2H0 117 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 TEX13DA0A0J9YY54 714 aaPredicted RBP13.07□□□□□ -0.32
SS18-211ENST00000578954 C3orf85A0A1B0GTC6 90 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 LINC00473A8K010 186 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 LEUTXA8MZ59 168 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 OOSP1A8MZH6 123 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 SMAD7O15105 426 aaKnown RBP13.07□□□□□ -0.32
SS18-211ENST00000578954 TXNL1O43396 289 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 TNFSF12O43508 249 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 CD5LO43866 347 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 DUS4LO95620 317 aaKnown RBP13.07□□□□□ -0.32
SS18-211ENST00000578954 IGHV1-69P01742 117 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 HLA-AP01891 365 aaKnown RBP13.07□□□□□ -0.32
SS18-211ENST00000578954 UCP1P25874 307 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 THBS3P49746 956 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 DIAPH2-AS1Q14236 149 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 KLF17Q5JT82 389 aaPredicted RBP13.07□□□□□ -0.32
SS18-211ENST00000578954 TPTE2P1Q5T6R2 138 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 MITD1Q8WV92 249 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 AJUBAQ96IF1 538 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 GPHA2Q96T91 129 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 NABP2Q9BQ15 211 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 LIN7CQ9NUP9 197 aaKnown RBP13.07□□□□□ -0.32
SS18-211ENST00000578954 KCNIP3Q9Y2W7 256 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 ZANQ9Y493 2812 aa13.07□□□□□ -0.32
SS18-211ENST00000578954 ZNF469Q96JG9 3925 aaPredicted RBP13.06□□□□□ -0.32
SS18-211ENST00000578954 A0A0A6YYJ9 748 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 A0A0B4J2A0 478 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 NPFFO15130 113 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 OR5AC1P0C628 307 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 CT45A6P0DMU7 189 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 CT45A5P0DMU8 189 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 CT45A7P0DMV0 189 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 VAMP1P23763 118 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms