RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZNF85Q03923 595 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 EXOSC2Q13868 293 aaKnown RBP13.31□□□□□ -0.28
CLK3-227ENST00000570296 FAM209BQ5JX69 171 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 GLDNQ6ZMI3 551 aaPredicted RBP13.31□□□□□ -0.28
CLK3-227ENST00000570296 KCNG3Q8TAE7 436 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 THTPAQ9BU02 230 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 KCNIP1Q9NZI2 227 aa13.31□□□□□ -0.28
CLK3-227ENST00000570296 ZNF230Q9UIE0 474 aaPredicted RBP13.31□□□□□ -0.28
CLK3-227ENST00000570296 DNAH5Q8TE73 4624 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 FAM223BA6NKX1 122 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 FAM90A23PA8MXZ1 464 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 MCRIP1C9JLW8 97 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 GNGT2O14610 69 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 CA11O75493 328 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 TUSC2O75896 110 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 HTR1AP08908 422 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 LGALS9BQ3B8N2 356 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 FAM223AQ8IWN6 122 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 ZNF645Q8N7E2 425 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 OR1L6Q8NGR2 347 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 CACNG8Q8WXS5 425 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 JAM3Q9BX67 310 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 MLXQ9UH92 298 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 SELENOKQ9Y6D0 94 aa13.3□□□□□ -0.28
CLK3-227ENST00000570296 TRAV25A0A0B4J276 109 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 OR4C45A6NMZ5 311 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 RAB3AP20336 220 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 RPL39P5Q59GN2 51 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 DMKNQ6E0U4 476 aaPredicted RBP13.29□□□□□ -0.28
CLK3-227ENST00000570296 ZNF529Q6P280 563 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 PELI1Q96FA3 418 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 AKIP1Q9NQ31 210 aa13.29□□□□□ -0.28
CLK3-227ENST00000570296 PAK1IP1Q9NWT1 392 aaPredicted RBP13.29□□□□□ -0.28
CLK3-227ENST00000570296 MAS1P04201 325 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 RPSAP08865 295 aaKnown RBP13.28□□□□□ -0.28
CLK3-227ENST00000570296 CPEP16870 476 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 ATP6V1E1P36543 226 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 RHOGP84095 191 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 ATP5G2Q06055 141 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 DHFR2Q86XF0 187 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 SLC38A6Q8IZM9 456 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 OR2C3Q8N628 320 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 POM121L12Q8N7R1 296 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 ADAD2Q8NCV1 583 aaKnown RBP13.28□□□□□ -0.28
CLK3-227ENST00000570296 SLC7A6OSQ96CW6 309 aaPredicted RBP13.28□□□□□ -0.28
CLK3-227ENST00000570296 IL4I1Q96RQ9 567 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 RARRES2Q99969 163 aa13.28□□□□□ -0.28
CLK3-227ENST00000570296 H3BNX3 289 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 M0R2N4 97 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 GGCTO75223 188 aaKnown RBP13.27□□□□□ -0.29
CLK3-227ENST00000570296 ZNF780AO75290 641 aaPredicted RBP13.27□□□□□ -0.29
CLK3-227ENST00000570296 SERPINA2P20848 420 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 FCGR2BP31994 310 aaPredicted RBP13.27□□□□□ -0.29
CLK3-227ENST00000570296 RIPK1Q13546 671 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 OR51A2Q8NGJ7 313 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 S100A13Q99584 98 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 MAP6D1Q9H9H5 199 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 SCRT2Q9NQ03 307 aa13.27□□□□□ -0.29
CLK3-227ENST00000570296 TMEM213A2RRL7 107 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 A8MWP6 167 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 C16orf90A8MZG2 172 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 ST8SIA5O15466 376 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 SC5DO75845 299 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 IGKV1-16P04430 117 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 OR9G9P0C7N8 305 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 GTF2F2P13984 249 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 MED22Q15528 200 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 C12orf73Q69YU5 71 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 RAB12Q6IQ22 244 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 NR2C2APQ86WQ0 139 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 GPHB5Q86YW7 130 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 UXS1Q8NBZ7 420 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 GALMQ96C23 342 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 STEAP1Q9UHE8 339 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 LRRC42Q9Y546 428 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 DMRT1Q9Y5R6 373 aa13.26□□□□□ -0.29
CLK3-227ENST00000570296 IGHV4-4A0A075B6R2 117 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 TRBV9A0A0B4J1U6 114 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 PPP5D1E7EU14 171 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 SLC16A6O15403 523 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 RPL35AP18077 110 aaKnown RBP13.25□□□□□ -0.29
CLK3-227ENST00000570296 PJVKQ0ZLH3 352 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 SOHLH1Q5JUK2 328 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 BTNL8Q6UX41 500 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 RBPMS2Q6ZRY4 209 aaKnown RBP13.25□□□□□ -0.29
CLK3-227ENST00000570296 CCDC124Q96CT7 223 aaKnown RBP13.25□□□□□ -0.29
CLK3-227ENST00000570296 ASB9Q96DX5 294 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 GALNT14Q96FL9 552 aa13.25□□□□□ -0.29
CLK3-227ENST00000570296 SHOXO15266 292 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 GPX5O75715 221 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 OR2C1O95371 312 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 HLA-AP01891 365 aaKnown RBP13.24□□□□□ -0.29
CLK3-227ENST00000570296 SCTP09683 121 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 P0DMU3 169 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 FAM231AP0DMU4 169 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 FAM231CP0DMU5 169 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 TMED1Q13445 227 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 PVRIGQ6DKI7 326 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 C5orf24Q7Z6I8 188 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 PDPNQ86YL7 162 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms