RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DUX4L3P0CJ86 424 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DUX4L4P0CJ87 422 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DUX4L5P0CJ88 424 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DUX4L6P0CJ89 424 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DUX4L7P0CJ90 424 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 IL3RAP26951 378 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 SSTR5P35346 364 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 THBS3P49746 956 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 LOXL3P58215 753 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 IL15RAQ13261 267 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 SNTB1Q13884 538 aaKnown RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 C2orf68Q2NKX9 166 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 LGALSLQ3ZCW2 172 aaPredicted RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 SPRNQ5BIV9 151 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DHRS7BQ6IAN0 325 aaPredicted RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 EIF5AL1Q6IS14 154 aaKnown RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 SELENOHQ8IZQ5 122 aaKnown RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 ZCCHC24Q8N2G6 241 aaKnown RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 KCNRGQ8N5I3 272 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 FAM71E2Q8N5Q1 922 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 FAM216BQ8N7L0 139 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 OR51H1Q8NH63 302 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 RNASE11Q8TAA1 199 aaKnown RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 WDR89Q96FK6 387 aaPredicted RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 TP53RKQ96S44 253 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 ABHD14AQ9BUJ0 271 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 OR2D2Q9H210 308 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 C7orf69Q9H7B7 122 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 GSKIPQ9P0R6 139 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 DUX4Q9UBX2 424 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 RPUSD1Q9UJJ7 312 aaKnown RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 TNFSF18Q9UNG2 199 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 MMP24Q9Y5R2 645 aa6.59□□□□□ -1.35
VPS39-213ENST00000570062 RP1L1Q8IWN7 2480 aaPredicted RBP6.59□□□□□ -1.35
VPS39-213ENST00000570062 SHANK1Q9Y566 2161 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 A0A087X0M5 115 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 TRAV39A0A0B4J263 110 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 A0A1B0GX30 115 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 NDUFS8O00217 210 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 WRBO00258 174 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 ARPC5O15511 151 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 PPIHO43447 177 aaKnown RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 ADAP1O75689 374 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 HPRT1P00492 218 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 COL8A2P25067 703 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 PPP1CCP36873 323 aaKnown RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 NKX2-1P43699 371 aaPredicted RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 GPR6P46095 362 aaPredicted RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 P2RY1P47900 373 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 NKX2-5P52952 324 aaPredicted RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 AP2S1P53680 142 aaPredicted RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 PRRX1P54821 245 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 DSCR9P59020 149 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 RAB14P61106 215 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 OPCMLQ14982 345 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 C17orf58Q2M2W7 97 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 SP6Q3SY56 376 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 FAM201AQ5SY85 155 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 TMEM200BQ69YZ2 307 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 C1orf122Q6ZSJ8 110 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 TMUB2Q71RG4 321 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 LYZL2Q7Z4W2 148 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 LINC00311Q8N616 119 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 TPRX1Q8N7U7 411 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 SLC35G3Q8N808 338 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 OR11H4Q8NGC9 324 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 RFESDQ8TAC1 157 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 C8orf46Q8TAG6 207 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 LRRC20Q8TCA0 184 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 H1FXQ92522 213 aaKnown RBP6.58□□□□□ -1.36
VPS39-213ENST00000570062 DCUN1D4Q92564 292 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 TMEM186Q96B77 213 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 PHYHIPLQ96FC7 376 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 AQP10Q96PS8 301 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 AGMATQ9BSE5 352 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 DCTN5Q9BTE1 182 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 SLC25A31Q9H0C2 315 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 UBTD1Q9HAC8 227 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 PSG11Q9UQ72 335 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 POMT1Q9Y6A1 747 aa6.58□□□□□ -1.36
VPS39-213ENST00000570062 TRAV14DV4A0A0A6YYC5 116 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 C17orf98A8MV24 154 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 G3V3Q6 166 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 SMLR1H3BR10 107 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 K7EPK0 472 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 CCSO14618 274 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 TOR1AO14656 332 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 TXNL1O43396 289 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 DEDDO75618 318 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 ZNF205O95201 554 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 HRASP01112 189 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 IGLV2-14P01704 120 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 SOD3P08294 240 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 NFYBP25208 207 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 AKR1C2P52895 323 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 TAS2R30P59541 319 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 ERVK-16P61578 105 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 VAMP2P63027 116 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 ID3Q02535 119 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 EIF4EBP1Q13541 118 aaPredicted RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms