RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 UNQ6494/PRO21346Q6UXR6 183 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 CISD2Q8N5K1 135 aaKnown RBP9.76□□□□□ -0.85
CLN3-238ENST00000569430 OR8G5Q8NG78 346 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 PPP1R35Q8TAP8 253 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 KCNE4Q8WWG9 221 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 ZNF106Q9H2Y7 1883 aaKnown RBP9.76□□□□□ -0.85
CLN3-238ENST00000569430 GZMBP10144 247 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 DUSP3P51452 185 aaPredicted RBP9.76□□□□□ -0.85
CLN3-238ENST00000569430 ID3Q02535 119 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 IL15RAQ13261 267 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 HLA-DRB5Q30154 266 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 TCF23Q7RTU1 214 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 KLHDC1Q8N7A1 406 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 WDR61Q9GZS3 305 aaKnown RBP9.76□□□□□ -0.85
CLN3-238ENST00000569430 C1QTNF9BB2RNN3 333 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 TNFRSF9Q07011 255 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 ATP6V1FQ16864 119 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 TBC1D28Q2M2D7 210 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 TUSC5Q8IXB3 177 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 ATOH7Q8N100 152 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 DEFB127Q9H1M4 99 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 KIF26AQ9ULI4 1882 aaPredicted RBP9.76□□□□□ -0.85
CLN3-238ENST00000569430 EREGO14944 169 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 CCL1P22362 96 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 ARR3P36575 388 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 CAMPP49913 170 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 C3AR1Q16581 482 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 ABHD14BQ96IU4 210 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 SRXN1Q9BYN0 137 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 PRDM13Q9H4Q3 707 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 ZG16O60844 167 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 CCL4P13236 92 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 TFPI2P48307 235 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 COL5A1-AS1Q5SY13 56 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 OR5B3Q8NH48 314 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 FAM131CQ96AQ9 280 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 LRFN3Q9BTN0 628 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 FZR1Q9UM11 496 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 RNF24Q9Y225 148 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 CACNA1HO95180 2353 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 FRYQ5TBA9 3013 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 USF3Q68DE3 2245 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 GNG4P50150 75 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 DMRTC2Q8IXT2 367 aaPredicted RBP9.75□□□□□ -0.85
CLN3-238ENST00000569430 DEFB108BQ8NET1 73 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 OR5R1Q8NH85 324 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 TMEM68Q96MH6 324 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 WNT5BQ9H1J7 359 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 ZNF552Q9H707 407 aaPredicted RBP9.75□□□□□ -0.85
CLN3-238ENST00000569430 TICRRQ7Z2Z1 1910 aa9.75□□□□□ -0.85
CLN3-238ENST00000569430 CADP27708 2225 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 TMEM30CPA0ZSE6 113 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 PI4KAP42356 2102 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 HINT1P49773 126 aaPredicted RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 SPINK14Q6IE38 97 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 RNASEKQ6P5S7 137 aaKnown RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 SLC25A45Q8N413 288 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 ZNF525Q8N782 197 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 LRTM2Q8N967 370 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 OR4P4Q8NGL7 312 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 DAZAP1Q96EP5 407 aaKnown RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 TMEM56Q96MV1 263 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 TMEM56-RWDD3S4R434 201 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 TRBV24-1A0A075B6N3 115 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 PPIHO43447 177 aaKnown RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 ZIC3O60481 467 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 TMEM50AO95807 157 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 CEACAM1P13688 526 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 SRD5A2P31213 254 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 TPPP3Q9BW30 176 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 PNRC2Q9NPJ4 139 aaKnown RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 NBASA2RRP1 2371 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 GDF9O60383 454 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 CD82P27701 267 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 NUTF2P61970 127 aaKnown RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 AESQ08117 197 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 SF3B5Q9BWJ5 86 aaKnown RBP9.74□□□□□ -0.85
CLN3-238ENST00000569430 KCNIP2Q9NS61 270 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 DLL3Q9NYJ7 618 aa9.74□□□□□ -0.85
CLN3-238ENST00000569430 TMEM250H0YL14 139 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 SLC17A3O00476 420 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 ANOS1P23352 680 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 SRP14P37108 136 aaKnown RBP9.73□□□□□ -0.85
CLN3-238ENST00000569430 CEBPDP49716 269 aaPredicted RBP9.73□□□□□ -0.85
CLN3-238ENST00000569430 RPEL1Q2QD12 228 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 LRRC75BQ2VPJ9 315 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 HES3Q5TGS1 186 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 OR8I2Q8N0Y5 310 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 OR5A2Q8NGI9 324 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 S1PR3Q99500 378 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 OR6C3Q9NZP0 311 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 PDE6DO43924 150 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 TNFSF10P50591 281 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 IGFBP7Q16270 282 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 C10orf128Q5T292 105 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 FAM90A2PQ658T7 463 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 TMEM256Q8N2U0 113 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 TCTEX1D1Q8N7M0 179 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 OR52L2PQ8NGH6 319 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 MRPL18Q9H0U6 180 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms