RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 C1orf100Q5SVJ3 147 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 ACSM6Q6P461 480 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 CD200R1LQ6Q8B3 271 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 GLDNQ6ZMI3 551 aaPredicted RBP11.52□□□□□ -0.57
CLN3-236ENST00000568558 ZNF367Q7RTV3 350 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 OVCH2Q7RTZ1 564 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 MUC7Q8TAX7 377 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 NICN1Q9BSH3 213 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 TM2D1Q9BX74 207 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 PARP12Q9H0J9 701 aaKnown RBP11.52□□□□□ -0.57
CLN3-236ENST00000568558 KCNK15Q9H427 330 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 A3GALT2U3KPV4 340 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 CSMD3Q7Z407 3707 aa11.52□□□□□ -0.57
CLN3-236ENST00000568558 STARD9Q9P2P6 4700 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 H0YJW9 148 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 FCN1O00602 326 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 FRMD6-AS1P0C7T7 363 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 HTR2CP28335 458 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 FABP5Q01469 135 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 TMEM267Q0VDI3 215 aaPredicted RBP11.51□□□□□ -0.57
CLN3-236ENST00000568558 PLGLAQ15195 96 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 HSD17B12Q53GQ0 312 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 CASC10Q5T4H9 136 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 GLT8D1Q68CQ7 371 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 PYHIN1Q6K0P9 492 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 MOB1BQ7L9L4 216 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 SPARTQ8N0X7 666 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 OR6Q1Q8NGQ2 317 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 KCNG3Q8TAE7 436 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 ABHD5Q8WTS1 349 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 ARPC1AQ92747 370 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 ABHD14BQ96IU4 210 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 GFI1Q99684 422 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 GHITMQ9H3K2 345 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 GAB2Q9UQC2 676 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 WASHC3Q9Y3C0 194 aa11.51□□□□□ -0.57
CLN3-236ENST00000568558 TRIM64CA6NLI5 447 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 TMEM14DPA8MWL7 114 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 H7C2Y5 167 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 ITGB1BP1O14713 200 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 RBBP9O75884 186 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 GSTP1P09211 210 aaKnown RBP11.5□□□□□ -0.57
CLN3-236ENST00000568558 OR8U9P0C7N5 309 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 SRMP19623 302 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 MC5RP33032 325 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 AKIRIN2Q53H80 203 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 ACTBL2Q562R1 376 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 UNQ5815/PRO19632Q6UWF5 114 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 PPP1R27Q86WC6 154 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 OR5AN1Q8NGI8 311 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 SETD6Q8TBK2 473 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 PHYHIPQ92561 330 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 AGMATQ9BSE5 352 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 FAM103A1Q9BTL3 118 aaKnown RBP11.5□□□□□ -0.57
CLN3-236ENST00000568558 CHMP1AQ9HD42 196 aaPredicted RBP11.5□□□□□ -0.57
CLN3-236ENST00000568558 RNF150Q9ULK6 438 aa11.5□□□□□ -0.57
CLN3-236ENST00000568558 A0A0A6YYD4 124 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 TRBV6-6A0A0A6YYG2 114 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 SLC22A1O15245 554 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 IGHV3-11P01762 117 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 HSPB1P04792 205 aaKnown RBP11.49□□□□□ -0.57
CLN3-236ENST00000568558 CD37P11049 281 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 QRFPP83859 136 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 PITPNAQ00169 270 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 FLYWCH2Q96CP2 140 aaKnown RBP11.49□□□□□ -0.57
CLN3-236ENST00000568558 RNF5Q99942 180 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 C11orf54Q9H0W9 315 aaPredicted RBP11.49□□□□□ -0.57
CLN3-236ENST00000568558 PLEKHJ1Q9NW61 149 aa11.49□□□□□ -0.57
CLN3-236ENST00000568558 METTL1Q9UBP6 276 aaKnown RBP11.49□□□□□ -0.57
CLN3-236ENST00000568558 MRPS14O60783 128 aaKnown RBP11.48□□□□□ -0.57
CLN3-236ENST00000568558 PROP1O75360 226 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 BPNT1O95861 308 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 CA2P00918 260 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 SNRPBP14678 240 aaKnown RBP11.48□□□□□ -0.57
CLN3-236ENST00000568558 TPPP2P59282 170 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 HLA-DRB3P79483 266 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 PSG5Q15238 335 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 TRAM1Q15629 374 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 UBE2UQ5VVX9 321 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 ZNF562Q6V9R5 426 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 LFNGQ8NES3 379 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 OR6M1Q8NGM8 313 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 EDARADDQ8WWZ3 215 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 RHOVQ96L33 236 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 MS4A10Q96PG2 267 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 OR4C12Q96R67 309 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 CLCC1Q96S66 551 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 HDHD3Q9BSH5 251 aaPredicted RBP11.48□□□□□ -0.57
CLN3-236ENST00000568558 YTHDF1Q9BYJ9 559 aaKnown RBP11.48□□□□□ -0.57
CLN3-236ENST00000568558 LPAR5Q9H1C0 372 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 RIMS4Q9H426 269 aaPredicted RBP11.48□□□□□ -0.57
CLN3-236ENST00000568558 SLA2Q9H6Q3 261 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 NDUFB11Q9NX14 153 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 OR1A1Q9P1Q5 309 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 AK3Q9UIJ7 227 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 AK6Q9Y3D8 172 aaKnown RBP11.48□□□□□ -0.57
CLN3-236ENST00000568558 TENM2Q9NT68 2774 aa11.48□□□□□ -0.57
CLN3-236ENST00000568558 SHISA3A0PJX4 238 aa11.47□□□□□ -0.57
CLN3-236ENST00000568558 ARPC1BO15143 372 aaKnown RBP11.47□□□□□ -0.57
CLN3-236ENST00000568558 SOCS1O15524 211 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms