RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NUBP2Q9Y5Y2 271 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 A3GALT2U3KPV4 340 aa14.5□□□□□ -0.09
CLN3-218ENST00000565688 FCN1O00602 326 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 SLC17A2O00624 439 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 SOCS1O15524 211 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 SAP30O75446 220 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 ARL6IP5O75915 188 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 LGALS1P09382 135 aaKnown RBP14.49□□□□□ -0.09
CLN3-218ENST00000565688 CD40LGP29965 261 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 IRF3Q14653 427 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 ACTBL2Q562R1 376 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 ZNF562Q6V9R5 426 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 GLDNQ6ZMI3 551 aaPredicted RBP14.49□□□□□ -0.09
CLN3-218ENST00000565688 PPP1R27Q86WC6 154 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 DLX4Q92988 240 aaPredicted RBP14.49□□□□□ -0.09
CLN3-218ENST00000565688 TMEM203Q969S6 136 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 TSNAXQ99598 290 aaKnown RBP14.49□□□□□ -0.09
CLN3-218ENST00000565688 OR1A1Q9P1Q5 309 aa14.49□□□□□ -0.09
CLN3-218ENST00000565688 SORL1Q92673 2214 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 ARPC1BO15143 372 aaKnown RBP14.48□□□□□ -0.09
CLN3-218ENST00000565688 SPDEFO95238 335 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 EGR2P11161 476 aaPredicted RBP14.48□□□□□ -0.09
CLN3-218ENST00000565688 CPEP16870 476 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 PSMA1P25786 263 aaKnown RBP14.48□□□□□ -0.09
CLN3-218ENST00000565688 TPBGQ13641 420 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 P2RY14Q15391 338 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 RAB11BQ15907 218 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 ASCL2Q99929 193 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 HDHD3Q9BSH5 251 aaPredicted RBP14.48□□□□□ -0.09
CLN3-218ENST00000565688 ALX4Q9H161 411 aaPredicted RBP14.48□□□□□ -0.09
CLN3-218ENST00000565688 SLA2Q9H6Q3 261 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 Q9N2K0 584 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 METTL1Q9UBP6 276 aaKnown RBP14.48□□□□□ -0.09
CLN3-218ENST00000565688 ZNF221Q9UK13 617 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 TPRKBQ9Y3C4 175 aa14.48□□□□□ -0.09
CLN3-218ENST00000565688 FOXI3A8MTJ6 420 aaPredicted RBP14.47□□□□□ -0.09
CLN3-218ENST00000565688 PSG5Q15238 335 aa14.47□□□□□ -0.09
CLN3-218ENST00000565688 UNQ5815/PRO19632Q6UWF5 114 aa14.47□□□□□ -0.09
CLN3-218ENST00000565688 TMEM91Q6ZNR0 172 aa14.47□□□□□ -0.09
CLN3-218ENST00000565688 FLYWCH2Q96CP2 140 aaKnown RBP14.47□□□□□ -0.09
CLN3-218ENST00000565688 TPSG1Q9NRR2 321 aa14.47□□□□□ -0.09
CLN3-218ENST00000565688 RYR3Q15413 4870 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 APOA2P02652 100 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 HSPB1P04792 205 aaKnown RBP14.46□□□□□ -0.09
CLN3-218ENST00000565688 TFAP2AP05549 437 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 SCTP09683 121 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 OR8U9P0C7N5 309 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 HSMCR30P0CW71 290 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 SLURP1P55000 103 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 ACSM6Q6P461 480 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 PDPNQ86YL7 162 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 OR56B1Q8NGI3 324 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 OR6Q1Q8NGQ2 317 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 CASTOR1Q8WTX7 329 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 ARHGAP5-AS1Q96IT6 56 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 CLCC1Q96S66 551 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 GFI1Q99684 422 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 CMSS1Q9BQ75 279 aaKnown RBP14.46□□□□□ -0.09
CLN3-218ENST00000565688 GAB2Q9UQC2 676 aa14.46□□□□□ -0.09
CLN3-218ENST00000565688 AK6Q9Y3D8 172 aaKnown RBP14.46□□□□□ -0.09
CLN3-218ENST00000565688 IGHV4OR15-8A0A075B7B6 117 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 A0A087WW49 117 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 TRDCB7Z8K6 153 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 C3orf84H3BNL1 204 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 SERPINB10P48595 397 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 VEGFCP49767 419 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 PSMD7P51665 324 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 TMEM50BP56557 158 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 TPPP2P59282 170 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 RPS16P62249 146 aaKnown RBP14.45□□□□□ -0.1
CLN3-218ENST00000565688 RPS25P62851 125 aaKnown RBP14.45□□□□□ -0.1
CLN3-218ENST00000565688 DRAXINQ8NBI3 349 aaPredicted RBP14.45□□□□□ -0.1
CLN3-218ENST00000565688 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.45□□□□□ -0.1
CLN3-218ENST00000565688 LFNGQ8NES3 379 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 ARPC1AQ92747 370 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 FAM103A1Q9BTL3 118 aaKnown RBP14.45□□□□□ -0.1
CLN3-218ENST00000565688 PECRQ9BY49 303 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 DUSP21Q9H596 190 aa14.45□□□□□ -0.1
CLN3-218ENST00000565688 ERICH4A6NGS2 130 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 RGS10O43665 173 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 PROP1O75360 226 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 CA2P00918 260 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 IGKV1-16P04430 117 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 CALRP27797 417 aaKnown RBP14.44□□□□□ -0.1
CLN3-218ENST00000565688 MRPS15P82914 257 aaKnown RBP14.44□□□□□ -0.1
CLN3-218ENST00000565688 PITPNAQ00169 270 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 MLLT11Q13015 90 aaPredicted RBP14.44□□□□□ -0.1
CLN3-218ENST00000565688 ZNF383Q8NA42 475 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 FAM3DQ96BQ1 224 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 RHOVQ96L33 236 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 MS4A10Q96PG2 267 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 OR4C12Q96R67 309 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 RDH8Q9NYR8 311 aa14.44□□□□□ -0.1
CLN3-218ENST00000565688 IGKV1-6A0A0C4DH72 117 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 DENRO43583 198 aaKnown RBP14.43□□□□□ -0.1
CLN3-218ENST00000565688 IGHV3-11P01762 117 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 GP9P14770 177 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 SPNP16150 400 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 FXYD3Q14802 87 aa14.43□□□□□ -0.1
CLN3-218ENST00000565688 C2orf76Q3KRA6 126 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms