RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 A0A0U1RQK1 487 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 FBP1P09467 338 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 ARHGDIBP52566 201 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 TGIF2LXQ8IUE1 241 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 OR8H3Q8N146 312 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 ZFAND1Q8TCF1 268 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 RTN4IP1Q8WWV3 396 aaPredicted RBP16.69■□□□□ 0.26
CLN3-212ENST00000564574 ZNF486Q96H40 463 aaPredicted RBP16.69■□□□□ 0.26
CLN3-212ENST00000564574 AJUBAQ96IF1 538 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 SLC25A21Q9BQT8 299 aaPredicted RBP16.69■□□□□ 0.26
CLN3-212ENST00000564574 ZNF251Q9BRH9 671 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 RSRP1Q9BUV0 290 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 MEGF9Q9H1U4 602 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 CCL28Q9NRJ3 127 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 SDHAF2Q9NX18 166 aa16.69■□□□□ 0.26
CLN3-212ENST00000564574 ZFHX3Q15911 3703 aa16.68■□□□□ 0.26
CLN3-212ENST00000564574 GPR31O00270 319 aa16.68■□□□□ 0.26
CLN3-212ENST00000564574 PGAM2P15259 253 aa16.68■□□□□ 0.26
CLN3-212ENST00000564574 DCTN2Q13561 401 aaKnown RBP16.68■□□□□ 0.26
CLN3-212ENST00000564574 RBMS2Q15434 407 aaKnown RBP16.68■□□□□ 0.26
CLN3-212ENST00000564574 RPL39P5Q59GN2 51 aa16.68■□□□□ 0.26
CLN3-212ENST00000564574 Q71RC1 249 aaPredicted RBP16.68■□□□□ 0.26
CLN3-212ENST00000564574 DRAM1Q8N682 238 aa16.68■□□□□ 0.26
CLN3-212ENST00000564574 HILPDAQ9Y5L2 63 aa16.68■□□□□ 0.26
CLN3-212ENST00000564574 INAFM1C9JVW0 142 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 IGLV2-14P01704 120 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 SRD5A1P18405 259 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 S100GP29377 79 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 GNRHRP30968 328 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 BTCP35070 178 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 SSX2Q16385 188 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 ZNF818PQ6ZRF7 136 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 CMTM1Q8IZ96 169 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 BVESQ8NE79 360 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 MARCH1Q8TCQ1 289 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 C17orf50Q8WW18 174 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 MRGPRFQ96AM1 343 aa16.67■□□□□ 0.26
CLN3-212ENST00000564574 NAV3Q8IVL0 2385 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 M0R1X1 148 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 PROP1O75360 226 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 CTSDP07339 412 aaPredicted RBP16.66■□□□□ 0.26
CLN3-212ENST00000564574 DIAPH2-AS1Q14236 149 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 AANATQ16613 207 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 ZNF66Q6ZN08 573 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 DYNAPQ8N1N2 210 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 ZDHHC22Q8N966 263 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 C5orf30Q96GV9 206 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 ADTRPQ96IZ2 230 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 DPAGT1Q9H3H5 408 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 PRDM13Q9H4Q3 707 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 COPZ2Q9P299 210 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 GPR132Q9UNW8 380 aa16.66■□□□□ 0.26
CLN3-212ENST00000564574 C14orf166Q9Y224 244 aaKnown RBP16.66■□□□□ 0.26
CLN3-212ENST00000564574 ANK3Q12955 4377 aaKnown RBP16.66■□□□□ 0.26
CLN3-212ENST00000564574 IGHV1-3A0A0C4DH29 117 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 A0A1W2PPI3 338 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 NDUFB6O95139 128 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 SLC6A1P30531 599 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 REG1BP48304 166 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 THBS3P49746 956 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 CCR6P51684 374 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 RND3P61587 244 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 TUSC1Q2TAM9 212 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 BCL6BQ8N143 479 aaPredicted RBP16.65■□□□□ 0.26
CLN3-212ENST00000564574 POC5Q8NA72 575 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 HSD17B10Q99714 261 aaKnown RBP16.65■□□□□ 0.26
CLN3-212ENST00000564574 NF1P21359 2839 aa16.65■□□□□ 0.26
CLN3-212ENST00000564574 FAM240BA0A1B0GVZ2 78 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 VGLL3A8MV65 326 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 CT45A6P0DMU7 189 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 CT45A5P0DMU8 189 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 CT45A7P0DMV0 189 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 BRS3P32247 399 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 DUTP33316 252 aaKnown RBP16.64■□□□□ 0.25
CLN3-212ENST00000564574 DYNLT3P51808 116 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 TAGLNQ01995 201 aaKnown RBP16.64■□□□□ 0.25
CLN3-212ENST00000564574 BAMBIQ13145 260 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 EIF4EBP1Q13541 118 aaPredicted RBP16.64■□□□□ 0.25
CLN3-212ENST00000564574 DEFB112Q30KQ8 113 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 ABCA11PQ4W5N1 156 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 CCDC71LQ8N9Z2 235 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 NABP2Q9BQ15 211 aa16.64■□□□□ 0.25
CLN3-212ENST00000564574 MRPL20Q9BYC9 149 aaKnown RBP16.64■□□□□ 0.25
CLN3-212ENST00000564574 SONP18583 2426 aaKnown RBP16.64■□□□□ 0.25
CLN3-212ENST00000564574 RNF212BA8MTL3 300 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 CATR1Q13166 79 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 HABP2Q14520 560 aaPredicted RBP16.63■□□□□ 0.25
CLN3-212ENST00000564574 MOB3BQ86TA1 216 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 ENKURQ8TC29 256 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 C22orf15Q8WYQ4 148 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 SLC2A9Q9NRM0 540 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 VSIG4Q9Y279 399 aa16.63■□□□□ 0.25
CLN3-212ENST00000564574 SOX21Q9Y651 276 aaPredicted RBP16.63■□□□□ 0.25
CLN3-212ENST00000564574 TIMM23O14925 209 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 CRLF1O75462 422 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 CD1BP29016 333 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 MC5RP33032 325 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 LRRC75BQ2VPJ9 315 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 PHLDA2Q53GA4 152 aa16.62■□□□□ 0.25
CLN3-212ENST00000564574 OR5AN1Q8NGI8 311 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms