RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZDHHC13Q8IUH4 622 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 GAPTQ8N292 157 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 SYS1Q8N2H4 156 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 DRAXINQ8NBI3 349 aaPredicted RBP5.48□□□□□ -1.53
VPS4A-203ENST00000564399 OR5AN1Q8NGI8 311 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 OR52B4Q8NGK2 314 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 GPR148Q8TDV2 347 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 THRSPQ92748 146 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 ABHD14BQ96IU4 210 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 TMEM68Q96MH6 324 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 PHB2Q99623 299 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 ZNF184Q99676 751 aaPredicted RBP5.48□□□□□ -1.53
VPS4A-203ENST00000564399 CIB1Q99828 191 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 SELENOIQ9C0D9 397 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 BANF2Q9H503 90 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 ZC4H2Q9NQZ6 224 aa5.48□□□□□ -1.53
VPS4A-203ENST00000564399 MBNL3Q9NUK0 354 aaKnown RBP5.48□□□□□ -1.53
VPS4A-203ENST00000564399 ABCA13Q86UQ4 5058 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 C2orf70A6NJV1 201 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 SNTNA6NMZ2 147 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 FAM90A23PA8MXZ1 464 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 MPPED1O15442 326 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 SC5DO75845 299 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 TUSC2O75896 110 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 BAG2O95816 211 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 APOA2P02652 100 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 IGKV1-16P04430 117 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 GLAP06280 429 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 ATF4P18848 351 aaPredicted RBP5.47□□□□□ -1.53
VPS4A-203ENST00000564399 EDN2P20800 178 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 APOC4P55056 127 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 PRR20EP86478 221 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 PRR20CP86479 221 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 PRR20DP86480 221 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 PRR20BP86481 221 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 PRR20AP86496 221 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 ATP5G2Q06055 141 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 PJVKQ0ZLH3 352 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 MRPL28Q13084 256 aaKnown RBP5.47□□□□□ -1.53
VPS4A-203ENST00000564399 EXOSC2Q13868 293 aaKnown RBP5.47□□□□□ -1.53
VPS4A-203ENST00000564399 ANKRD55Q3KP44 614 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 GLIPR1L1Q6UWM5 242 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 JAGN1Q8N5M9 183 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 MRPL30Q8TCC3 161 aaKnown RBP5.47□□□□□ -1.53
VPS4A-203ENST00000564399 TRUB1Q8WWH5 349 aaKnown RBP5.47□□□□□ -1.53
VPS4A-203ENST00000564399 MUL1Q969V5 352 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 ORAI1Q96D31 301 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 CYYR1Q96J86 154 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 MED4Q9NPJ6 270 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 TP53TG1Q9Y2A0 90 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 GMPPBQ9Y5P6 360 aa5.47□□□□□ -1.53
VPS4A-203ENST00000564399 MSGN1A6NI15 193 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 FAM90A7PA6NKC0 464 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 PDCD6O75340 191 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 RBMXL2O75526 392 aaKnown RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 CRTAPO75718 401 aaPredicted RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 SCAF4O95104 1147 aaKnown RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 IFNA4P05014 189 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 MGMTP16455 207 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 GTF2A1P52655 376 aaPredicted RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 SSBP2P81877 361 aaPredicted RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 RHOGP84095 191 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 ATP6AP1Q15904 470 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 TM4SF20Q53R12 229 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 MEDAGQ5VYS4 303 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 ZNF57Q68EA5 555 aaPredicted RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 AWAT2Q6E213 333 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 LINC00336Q6ZUF6 198 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 Q6ZWC4 215 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 AMIGO2Q86SJ2 522 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 PDPNQ86YL7 162 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 TMEM61Q8N0U2 210 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 SETD6Q8TBK2 473 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 LGALS12Q96DT0 336 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 NEDD4LQ96PU5 975 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 GABARAPL3Q9BY60 117 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 GABARAPL1Q9H0R8 117 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 CHMP1AQ9HD42 196 aaPredicted RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 AKIP1Q9NQ31 210 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 ZNF446Q9NWS9 450 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 ERVK13-1Q9NX77 482 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 FBXL17Q9UF56 701 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 ZNF221Q9UK13 617 aa5.46□□□□□ -1.54
VPS4A-203ENST00000564399 EXOGQ9Y2C4 368 aaKnown RBP5.46□□□□□ -1.54
VPS4A-203ENST00000564399 ZNF320A2RRD8 509 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 FAM223BA6NKX1 122 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 PPP5D1E7EU14 171 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 UBE2CO00762 179 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 XRCC3O43542 346 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 OR2C1O95371 312 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 HLA-AP01891 365 aaKnown RBP5.45□□□□□ -1.54
VPS4A-203ENST00000564399 PRH1P02810 166 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 OR9G9P0C7N8 305 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 T-ENOLP0DO92 83 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 CBLN1P23435 193 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 FASP25445 335 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 CAPGP40121 348 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 CEACAM6P40199 344 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 LINC00205P59089 165 aa5.45□□□□□ -1.54
VPS4A-203ENST00000564399 SNRPGP62308 76 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms