RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MBP02144 154 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 NMBP08949 121 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 CGB3P0DN86 165 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 CGB7P0DN87 165 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 EGR1P18146 543 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 ZP3P21754 424 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 CD80P33681 288 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 SSTR5P35346 364 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 PLA2G5P39877 138 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 SULT1A2P50226 295 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 TMEM33P57088 247 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 CCL8P80075 99 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 PXDC1Q5TGL8 231 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 ZNF429Q86V71 674 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 FGFRL1Q8N441 504 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 LINC00311Q8N616 119 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 BOLLQ8N9W6 283 aaKnown RBP6.25□□□□□ -1.41
VPS39-204ENST00000561818 OR4A5Q8NH83 315 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 OR1L1Q8NH94 360 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 TMEM186Q96B77 213 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 ATP5SQ99766 215 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 ZNF251Q9BRH9 671 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 GINS3Q9BRX5 216 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 AGMATQ9BSE5 352 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 PBDC1Q9BVG4 233 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 GGACTQ9BVM4 153 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 ARV1Q9H2C2 271 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 HIPK2Q9H2X6 1198 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 UNKLQ9H9P5 680 aaKnown RBP6.25□□□□□ -1.41
VPS39-204ENST00000561818 PARP11Q9NR21 331 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 MMP26Q9NRE1 261 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 HSPB7Q9UBY9 170 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 FBXL17Q9UF56 701 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 NUP50Q9UKX7 468 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 ANKHD1Q8IWZ3 2542 aaKnown RBP6.25□□□□□ -1.41
VPS39-204ENST00000561818 PRRC2CQ9Y520 2896 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 SPTBN2O15020 2390 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 A0A087X0M5 115 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 A0A1B0GX30 115 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 MARCH11A6NNE9 402 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 MPTX1A8MV57 137 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 FGF16O43320 207 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SSSCA1O60232 199 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 MPDU1O75352 247 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 NDUFS6O75380 124 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 IGLV2-14P01704 120 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SPP1P10451 314 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 ZNF16P17020 682 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 NDUFB7P17568 137 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 MC5RP33032 325 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 DUTP33316 252 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 PPP1CCP36873 323 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 CEBPDP49716 269 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 ZNF137PP52743 207 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 LOXL3P58215 753 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SERF2P84101 59 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 ADORA2A-AS1P86434 159 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 EWSR1Q01844 656 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS39-204ENST00000561818 TLE4Q04727 773 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 TNFRSF9Q07011 255 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 EIF4EBP1Q13541 118 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 ESPL1Q14674 2120 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 POU2AF1Q16633 256 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 MSMPQ1L6U9 139 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SLC25A24Q6NUK1 477 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SLC25A48Q6ZT89 311 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 DTX2Q86UW9 622 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 DMRTC2Q8IXT2 367 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 TMEM252Q8N6L7 170 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 ZNRF1Q8ND25 227 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 OR8B3Q8NGG8 313 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 LHFPL5Q8TAF8 219 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 OSR1Q8TAX0 266 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 ZNF596Q8TC21 504 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SCGB1C1Q8TD33 95 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 CCL17Q92583 94 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 MARC2Q969Z3 335 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 NEIL1Q96FI4 390 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 OR8B2Q96RD0 313 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 PSMG3Q9BT73 122 aaPredicted RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 CHODLQ9H9P2 273 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 SDHAF2Q9NX18 166 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 CACNG5Q9UF02 275 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 PRNDQ9UKY0 176 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 PSG11Q9UQ72 335 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 RCL1Q9Y2P8 373 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 ZNF257Q9Y2Q1 563 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 FBXO7Q9Y3I1 522 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 CHD3Q12873 2000 aaKnown RBP6.24□□□□□ -1.41
VPS39-204ENST00000561818 CACNA1AO00555 2505 aa6.24□□□□□ -1.41
VPS39-204ENST00000561818 ANKRD34BA5PLL1 514 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 ZNF705EA8MWA4 302 aaPredicted RBP6.23□□□□□ -1.41
VPS39-204ENST00000561818 LEUTXA8MZ59 168 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 FNDC10F2Z333 226 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 C17orf112F2Z3M2 114 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 M0R1X1 148 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 TNFSF12O43508 249 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 RBMXL2O75526 392 aaKnown RBP6.23□□□□□ -1.41
VPS39-204ENST00000561818 CYB5R3P00387 301 aaPredicted RBP6.23□□□□□ -1.41
VPS39-204ENST00000561818 CFDP00746 253 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms