RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ASH1LQ9NR48 2969 aaKnown RBP17.46■□□□□ 0.38
CLN3-209ENST00000561689 M0R1X1 148 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 ARID1AO14497 2285 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 GPR37O15354 613 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 IGKV1-39P01597 117 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 IGKV1D-39P04432 117 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 RAB32Q13637 225 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 LYG1Q8N1E2 194 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 FAM216AQ8WUB2 273 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 IL22RA2Q969J5 263 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 MBD2Q9UBB5 411 aa17.45■□□□□ 0.38
CLN3-209ENST00000561689 CFDP00746 253 aaPredicted RBP17.44■□□□□ 0.38
CLN3-209ENST00000561689 BRWD1-AS2P59051 145 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 S100A10P60903 97 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 GNB2P62879 340 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 CATR1Q13166 79 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 ZNF66Q6ZN08 573 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 ZNF546Q86UE3 836 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 FOXRED2Q8IWF2 684 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 C11orf42Q8N5U0 333 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 THAP6Q8TBB0 222 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 HSD17B10Q99714 261 aaKnown RBP17.44■□□□□ 0.38
CLN3-209ENST00000561689 YLPM1P49750 1951 aaKnown RBP17.44■□□□□ 0.38
CLN3-209ENST00000561689 SAA2-SAA4A0A096LPE2 208 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 HMSDA8MTL9 139 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 C17orf98A8MV24 154 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 SAA2P0DJI9 122 aaPredicted RBP17.44■□□□□ 0.38
CLN3-209ENST00000561689 PLA2G2AP14555 144 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 VDAC1P21796 283 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 COL8A1P27658 744 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 SLC25A48Q6ZT89 311 aaKnown RBP17.44■□□□□ 0.38
CLN3-209ENST00000561689 ODF3L1Q8IXM7 274 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 SPAG16Q8N0X2 631 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 NRGNQ92686 78 aa17.44■□□□□ 0.38
CLN3-209ENST00000561689 PPIAL4CA0A0B4J2A2 164 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 H0YIZ8 118 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 KCNAB3O43448 404 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 SCGB1D2O95969 90 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 PPIAL4GP0DN37 164 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 SLC25A4P12235 298 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 DUTP33316 252 aaKnown RBP17.43■□□□□ 0.38
CLN3-209ENST00000561689 LPAR6P43657 344 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 NMSQ5H8A3 153 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 NCR3LG1Q68D85 454 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 RNF126Q9BV68 326 aa17.43■□□□□ 0.38
CLN3-209ENST00000561689 CLEC18AA5D8T8 446 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 C22orf46C9J442 243 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 RAB29O14966 203 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 IGHV1-8P0DP01 117 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 AP2S1P53680 142 aaPredicted RBP17.42■□□□□ 0.38
CLN3-209ENST00000561689 ZNF816Q0VGE8 651 aaPredicted RBP17.42■□□□□ 0.38
CLN3-209ENST00000561689 ZNF295-AS1Q8N0V1 137 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 CLEC18CQ8NCF0 446 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 SSBP3Q9BWW4 388 aaPredicted RBP17.42■□□□□ 0.38
CLN3-209ENST00000561689 A0A0G2JRQ6 117 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 DUXBA0A1W2PPF3 345 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 DLX1P56177 255 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 OPCMLQ14982 345 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 IZUMO4Q1ZYL8 232 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 BPESC1Q9GZL8 116 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 OR5AC2Q9NZP5 309 aa17.42■□□□□ 0.38
CLN3-209ENST00000561689 F5H0A9 414 aaPredicted RBP17.41■□□□□ 0.38
CLN3-209ENST00000561689 L7N2F9 121 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 IGKV1-5P01602 117 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 RPA2P15927 270 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 PRB3Q04118 309 aaPredicted RBP17.41■□□□□ 0.38
CLN3-209ENST00000561689 EXOSC2Q13868 293 aaKnown RBP17.41■□□□□ 0.38
CLN3-209ENST00000561689 RNASE11Q8TAA1 199 aaKnown RBP17.41■□□□□ 0.38
CLN3-209ENST00000561689 C8orf46Q8TAG6 207 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 RAB39BQ96DA2 213 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 ZNF251Q9BRH9 671 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 MFFQ9GZY8 342 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 GAB2Q9UQC2 676 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 SPG11Q96JI7 2443 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 TENM4Q6N022 2769 aa17.41■□□□□ 0.38
CLN3-209ENST00000561689 MBPP02686 304 aaPredicted RBP17.4■□□□□ 0.38
CLN3-209ENST00000561689 EPHA1P21709 976 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 TMEM65Q6PI78 240 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 DCUN1D4Q92564 292 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 TNFSF18Q9UNG2 199 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 LSM5Q9Y4Y9 91 aaKnown RBP17.4■□□□□ 0.38
CLN3-209ENST00000561689 USP9YO00507 2555 aaPredicted RBP17.4■□□□□ 0.38
CLN3-209ENST00000561689 J3QKU1 62 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 S1PR2O95136 353 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 AKR1C2P52895 323 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 ESCO2Q56NI9 601 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 OR8H3Q8N146 312 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 LY6G5BQ8NDX9 201 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 PCNPQ8WW12 178 aaKnown RBP17.4■□□□□ 0.38
CLN3-209ENST00000561689 GPR146Q96CH1 333 aa17.4■□□□□ 0.38
CLN3-209ENST00000561689 A0A1W2PPH5 198 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 FCGR3BO75015 233 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 PRSS54Q6PEW0 395 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.39■□□□□ 0.37
CLN3-209ENST00000561689 OR4D5Q8NGN0 318 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 OR1S1Q8NH92 325 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 ONECUT1Q9UBC0 465 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 SESN1Q9Y6P5 492 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 LOC105371242A0A075B767 164 aa17.39■□□□□ 0.37
CLN3-209ENST00000561689 KRASP01116 189 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms