RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MECP2P51608 486 aaKnown RBP12.54□□□□□ -0.4
CLN3-208ENST00000561505 ST3GAL4Q11206 333 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 HAGHQ16775 308 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 LINC00322Q6ZN03 302 aaPredicted RBP12.54□□□□□ -0.4
CLN3-208ENST00000561505 MOB1BQ7L9L4 216 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 C6orf201Q7Z4U5 140 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 SGPP2Q8IWX5 399 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 ZNF555Q8NEP9 628 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 FAM46BQ96A09 425 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 NEDD4LQ96PU5 975 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 SPATA25Q9BR10 227 aa12.54□□□□□ -0.4
CLN3-208ENST00000561505 FAM103A1Q9BTL3 118 aaKnown RBP12.54□□□□□ -0.4
CLN3-208ENST00000561505 RIMS4Q9H426 269 aaPredicted RBP12.54□□□□□ -0.4
CLN3-208ENST00000561505 HYDINQ4G0P3 5121 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 TMEM14DPA8MWL7 114 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 SLC22A1O15245 554 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 GSTP1P09211 210 aaKnown RBP12.53□□□□□ -0.4
CLN3-208ENST00000561505 CELP19835 753 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 MAPK3P27361 379 aaPredicted RBP12.53□□□□□ -0.4
CLN3-208ENST00000561505 TPPP2P59282 170 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 UNC119Q13432 240 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 LAIR2Q6ISS4 152 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 GLDNQ6ZMI3 551 aaPredicted RBP12.53□□□□□ -0.4
CLN3-208ENST00000561505 LRRTM1Q86UE6 522 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 FAM89BQ8N5H3 189 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 PHYHIPQ92561 330 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 ABHD14BQ96IU4 210 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 MS4A10Q96PG2 267 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 C11orf54Q9H0W9 315 aaPredicted RBP12.53□□□□□ -0.4
CLN3-208ENST00000561505 PLCXD1Q9NUJ7 323 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 METTL1Q9UBP6 276 aaKnown RBP12.53□□□□□ -0.4
CLN3-208ENST00000561505 A3GALT2U3KPV4 340 aa12.53□□□□□ -0.4
CLN3-208ENST00000561505 PLECQ15149 4684 aaKnown RBP12.53□□□□□ -0.4
CLN3-208ENST00000561505 FOXI3A8MTJ6 420 aaPredicted RBP12.52□□□□□ -0.41
CLN3-208ENST00000561505 CA2P00918 260 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 TRGV3P03979 118 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 IGKV1-16P04430 117 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 CRYGBP07316 175 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 CD40LGP29965 261 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 PLGLAQ15195 96 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 TTC23Q5W5X9 447 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 OR10K2Q6IF99 312 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 HAPLN4Q86UW8 402 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 ANKRD13BQ86YJ7 626 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 ZNF383Q8NA42 475 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 POC5Q8NA72 575 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 KCNG3Q8TAE7 436 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 IL1F10Q8WWZ1 152 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 EDARADDQ8WWZ3 215 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 TMEM68Q96MH6 324 aa12.52□□□□□ -0.41
CLN3-208ENST00000561505 TSNAXQ99598 290 aaKnown RBP12.52□□□□□ -0.41
CLN3-208ENST00000561505 A0A0A6YYD4 124 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 A0A0G2JLM5 398 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 H0Y980 276 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 IGLV2-23P01705 113 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 WNT4P56705 351 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 ZNF343Q6P1L6 599 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 PDPNQ86YL7 162 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 NANOGP1Q8N7R0 232 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 OR9G4Q8NGQ1 327 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 FBLIM1Q8WUP2 373 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 NICN1Q9BSH3 213 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 TMEM59Q9BXS4 323 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 FKBP14Q9NWM8 211 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 PSORS1C1Q9UIG5 152 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 HSF4Q9ULV5 492 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 MGAT4AQ9UM21 535 aa12.51□□□□□ -0.41
CLN3-208ENST00000561505 H7C2Y5 167 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 CSN3P07498 182 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 ZBTB25P24278 435 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 FXYD3Q14802 87 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 SETD9Q8NE22 299 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 CLCC1Q96S66 551 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 LPAR5Q9H1C0 372 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 OR1A1Q9P1Q5 309 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 TNCP24821 2201 aa12.5□□□□□ -0.41
CLN3-208ENST00000561505 BPNT1O95861 308 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 CEACAM6P40199 344 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 LGALS7P47929 136 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 LINC00205P59089 165 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 HLA-DRB3P79483 266 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 INSL4Q14641 139 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 MRGPRG-AS1Q2M3A8 158 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 ACSM3Q53FZ2 586 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 RNLSQ5VYX0 342 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 GLT8D1Q68CQ7 371 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 ADAMTSL5Q6ZMM2 481 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 MS4A15Q8N5U1 240 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.49□□□□□ -0.41
CLN3-208ENST00000561505 ABHD5Q8WTS1 349 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 TINAGL1Q9GZM7 467 aaPredicted RBP12.49□□□□□ -0.41
CLN3-208ENST00000561505 Q9N2K0 584 aa12.49□□□□□ -0.41
CLN3-208ENST00000561505 IGKV1-6A0A0C4DH72 117 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 PNMA8CA0A1B0GUJ8 204 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 ARSBP15848 533 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 CPEP16870 476 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 AADACP22760 399 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 TMEM50BP56557 158 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 RPS16P62249 146 aaKnown RBP12.48□□□□□ -0.41
CLN3-208ENST00000561505 Q8N402 240 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms