RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 CD24P25063 80 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 TAS2R19P59542 299 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 CCBE1Q6UXH8 406 aaPredicted RBP17.39■□□□□ 0.37
SNX1-206ENST00000559389 TMEM229BQ8NBD8 167 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 TRIM63Q969Q1 353 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 SRRQ9GZT4 340 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 SDHAF2Q9NX18 166 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 PITPNC1Q9UKF7 332 aa17.39■□□□□ 0.37
SNX1-206ENST00000559389 SETD2Q9BYW2 2564 aaPredicted RBP17.39■□□□□ 0.37
SNX1-206ENST00000559389 IGHV3-72A0A0B4J1Y9 119 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 M0QYG6 137 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 CHST1O43916 411 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 CD74P04233 296 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 CD3DP04234 171 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 CSF1P09603 554 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 RPL15P61313 204 aaKnown RBP17.38■□□□□ 0.37
SNX1-206ENST00000559389 PYDC2Q56P42 97 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 RNASE10Q5GAN6 216 aaKnown RBP17.38■□□□□ 0.37
SNX1-206ENST00000559389 LINC00299Q6ZSB3 139 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 THNSL2Q86YJ6 484 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 ZNF645Q8N7E2 425 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 CAPSLQ8WWF8 208 aa17.38■□□□□ 0.37
SNX1-206ENST00000559389 NIPBLQ6KC79 2804 aaeCLIP17.38■□□□□ 0.37
SNX1-206ENST00000559389 C2CD3Q4AC94 2353 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 CUBNO60494 3623 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 J3QRK9 145 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 M0R1X1 148 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 CD1BP29016 333 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 KRTAP24-1Q3LI83 254 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 DHRS11Q6UWP2 260 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 TMEM219Q86XT9 240 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 MOB3AQ96BX8 217 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 ZNF2Q9BSG1 426 aaPredicted RBP17.37■□□□□ 0.37
SNX1-206ENST00000559389 TINAGL1Q9GZM7 467 aaPredicted RBP17.37■□□□□ 0.37
SNX1-206ENST00000559389 TAS2R8Q9NYW2 309 aa17.37■□□□□ 0.37
SNX1-206ENST00000559389 FAM181BA6NEQ2 426 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 IGKV1D-33P01593 117 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 IGKV1-33P01594 117 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 FAM106CPP0CH98 169 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 CT45A6P0DMU7 189 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 CT45A5P0DMU8 189 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 CT45A7P0DMV0 189 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 FXYD4P59646 89 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 HERV-K104P61576 105 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 EBI3Q14213 229 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 STEAP1BQ6NZ63 245 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 Q8N402 240 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.36■□□□□ 0.37
SNX1-206ENST00000559389 OR6F1Q8NGZ6 308 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 FXYD6Q9H0Q3 95 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 JMJD1CQ15652 2540 aa17.36■□□□□ 0.37
SNX1-206ENST00000559389 ANKRD20A5PA0PJZ0 165 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 OR5H14A6NHG9 310 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 SLC22A5O76082 557 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 RAB3DO95716 219 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 IGLV2-14P01704 120 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 MSMO1Q15800 293 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 MFSD4AQ8N468 514 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 ARRDC1Q8N5I2 433 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 OR4D10Q8NGI6 311 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 OR5AN1Q8NGI8 311 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 SECTM1Q8WVN6 248 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 THAP7Q9BT49 309 aaPredicted RBP17.35■□□□□ 0.37
SNX1-206ENST00000559389 RAB18Q9NP72 206 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 AKIP1Q9NQ31 210 aa17.35■□□□□ 0.37
SNX1-206ENST00000559389 H0YJW9 148 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 OR2F2O95006 317 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 TMEM11P17152 192 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 ZNF45Q02386 682 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 HES1Q14469 280 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 DHRS7BQ6IAN0 325 aaPredicted RBP17.34■□□□□ 0.37
SNX1-206ENST00000559389 GLDNQ6ZMI3 551 aaPredicted RBP17.34■□□□□ 0.37
SNX1-206ENST00000559389 C16orf82Q7Z2V1 217 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 TMEM17Q86X19 198 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 Q8N6K4 173 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 ZNF383Q8NA42 475 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 DRAXINQ8NBI3 349 aaPredicted RBP17.34■□□□□ 0.37
SNX1-206ENST00000559389 EAF1Q96JC9 268 aaPredicted RBP17.34■□□□□ 0.37
SNX1-206ENST00000559389 RBM14Q96PK6 669 aaKnown RBP17.34■□□□□ 0.37
SNX1-206ENST00000559389 SLC5A7Q9GZV3 580 aa17.34■□□□□ 0.37
SNX1-206ENST00000559389 AKAIN1P0CW23 69 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 TSPAN5P62079 268 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 MEF2DQ14814 521 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 GDPD1Q8N9F7 314 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 OR2T10Q8NGZ9 312 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 SDHCQ99643 169 aaPredicted RBP17.33■□□□□ 0.36
SNX1-206ENST00000559389 SLC25A33Q9BSK2 321 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 CCL28Q9NRJ3 127 aa17.33■□□□□ 0.36
SNX1-206ENST00000559389 MOSP00540 346 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 IFNA6P05013 189 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 DUTP33316 252 aaKnown RBP17.32■□□□□ 0.36
SNX1-206ENST00000559389 THBS3P49746 956 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 LINC00205P59089 165 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 EIF4EBP1Q13541 118 aaPredicted RBP17.32■□□□□ 0.36
SNX1-206ENST00000559389 FAAP20Q6NZ36 180 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 LHFPL1Q86WI0 220 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 OR4C16Q8NGL9 310 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 RBMXL1Q96E39 390 aaKnown RBP17.32■□□□□ 0.36
SNX1-206ENST00000559389 C1RLQ9NZP8 487 aa17.32■□□□□ 0.36
SNX1-206ENST00000559389 MOB4Q9Y3A3 225 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms