RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 RAB8BQ92930 207 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 TMBIM1Q969X1 311 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 PTH2Q96A98 100 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 EBNA1BP2Q99848 306 aaKnown RBP1.13□□□□□ -2.23
VPS13C-207ENST00000558919 MED18Q9BUE0 208 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 DERL2Q9GZP9 239 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 MAP1LC3AQ9H492 121 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 HRASLSQ9HDD0 168 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 GUCA1BQ9UMX6 200 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 C9orf84Q5VXU9 1444 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 RIMS2Q9UQ26 1411 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 ICE1Q9Y2F5 2266 aa1.13□□□□□ -2.23
VPS13C-207ENST00000558919 ATG2BQ96BY7 2078 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 MAP3K5Q99683 1374 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 STRCP1A6NGW2 1772 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 IGKV1-12A0A0C4DH73 117 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 C21orf140B9A014 251 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 ACOX3O15254 700 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 TGOLN2O43493 480 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 SLC25A20O43772 301 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 DCTN3O75935 186 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 IGKV1D-12P01611 117 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 IL6P05231 212 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 CRYBA1P05813 215 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 OR4A8P0C604 315 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 ORM2P19652 201 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 CXCL3P19876 107 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 RPS12P25398 132 aaKnown RBP1.12□□□□□ -2.23
VPS13C-207ENST00000558919 RPL12P30050 165 aaKnown RBP1.12□□□□□ -2.23
VPS13C-207ENST00000558919 GABRA3P34903 492 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 CDKN2CP42773 168 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 PSMB3P49720 205 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 NKX2-5P52952 324 aaPredicted RBP1.12□□□□□ -2.23
VPS13C-207ENST00000558919 CXCR4P61073 352 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 SLC35A2P78381 396 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 APOFQ13790 326 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 PDK2Q15119 407 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 IMPG1Q17R60 797 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 EBLN2Q6P2I7 272 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 CD200R1LQ6Q8B3 271 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 RASSF6Q6ZTQ3 369 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 SCXQ7RTU7 201 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 NAA40Q86UY6 237 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 COMMD7Q86VX2 200 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 ZFAND2AQ8N6M9 145 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 TMEM75Q8N9X5 138 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 OR10P1Q8NGE3 313 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 OR51H1Q8NH63 302 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 MFSD8Q8NHS3 518 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 CD200R1Q8TD46 325 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 ABHD14BQ96IU4 210 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 MBOAT7Q96N66 472 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 OR7D2Q96RA2 312 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 PARD6GQ9BYG4 376 aaPredicted RBP1.12□□□□□ -2.23
VPS13C-207ENST00000558919 GTSF1LQ9H1H1 148 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 C11orf49Q9H6J7 331 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 MRPL16Q9NX20 251 aaKnown RBP1.12□□□□□ -2.23
VPS13C-207ENST00000558919 DNAJC12Q9UKB3 198 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 POLR1DQ9Y2S0 133 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 HDGFL3Q9Y3E1 203 aa1.12□□□□□ -2.23
VPS13C-207ENST00000558919 A0A1W2PP64 1363 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 TRAV8-1A0A0A6YYK1 113 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 C5orf49A4QMS7 147 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 KCNK1O00180 336 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 TP53I11O14683 189 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 STK16O75716 305 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 RPP14O95059 124 aaKnown RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 HLA-DRAP01903 254 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 TNNC2P02585 160 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ATP5G1P05496 136 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 SERPINA6P08185 405 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 IL3P08700 152 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 OR13C7P0DN81 318 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ZNF7P17097 686 aaPredicted RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 MYL12AP19105 171 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 CXCL2P19875 107 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 DDTP30046 118 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 PPP1CCP36873 323 aaKnown RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 OR1E2P47887 323 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 RAP1GDS1P52306 607 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 AKR1C2P52895 323 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 TCL1AP56279 114 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ACTBP60709 375 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ACTG1P63261 375 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 DEFA6Q01524 100 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 TSPAN31Q12999 210 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 FADDQ13158 208 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 EBPQ15125 230 aaKnown RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ACSM3Q53FZ2 586 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 MESTQ5EB52 335 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 CLVS2Q5SYC1 327 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 N4BP2L1Q5TBK1 243 aaPredicted RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 LCN8Q6JVE9 175 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ZNF322Q6U7Q0 402 aaPredicted RBP1.11□□□□□ -2.23
VPS13C-207ENST00000558919 Q6ZRU5 148 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 ATP5L2Q7Z4Y8 100 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 YIPF7Q8N8F6 280 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 HAVCR2Q8TDQ0 301 aa1.11□□□□□ -2.23
VPS13C-207ENST00000558919 GPR119Q8TDV5 335 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms