RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 CD28P10747 220 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 PTHLHP12272 177 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 MGMTP16455 207 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 CNTFRP26992 372 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 GLP1RP43220 463 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 SEC61BP60468 96 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 MEF2CQ06413 473 aaPredicted RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 MRPL28Q13084 256 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 RBM39Q14498 530 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 LRRC75BQ2VPJ9 315 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 CT45A1Q5HYN5 189 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 TCTEX1D4Q5JR98 221 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 SPIN3Q5JUX0 258 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 RBM48Q5RL73 367 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 SYT6Q5T7P8 510 aaPredicted RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 C22orf42Q6IC83 251 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 RAB12Q6IQ22 244 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 HEPN1Q6WQI6 88 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 ZNF497Q6ZNH5 498 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 C18orf65Q6ZTR6 163 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 PRSS48Q7RTY5 328 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 DRAM1Q8N682 238 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 OR10V1Q8NGI7 309 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 OR5H6Q8NGV6 325 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 CT45A3Q8NHU0 189 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 MRPL30Q8TCC3 161 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 ZFAND2BQ8WV99 257 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 SSMEM1Q8WWF3 244 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 MAFIPQ8WZ33 124 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 ARL11Q969Q4 196 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 MALSU1Q96EH3 234 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 RRNAD1Q96FB5 475 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 MRPL48Q96GC5 212 aaKnown RBP3.35□□□□□ -1.87
SPG11-211ENST00000558561 MND1Q9BWT6 205 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 C1QTNF4Q9BXJ3 329 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 LPAR5Q9H1C0 372 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 ZNF702PQ9H963 129 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 CALYQ9NYX4 217 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 IDI2-AS1Q9NZ38 188 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 IL36GQ9NZH8 169 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 VPREB3Q9UKI3 123 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 RNF150Q9ULK6 438 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 RAB26Q9ULW5 256 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 KCNK7Q9Y2U2 307 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 LRRC42Q9Y546 428 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 LINC00312Q9Y6C7 94 aa3.35□□□□□ -1.87
SPG11-211ENST00000558561 TRGV10A0A0A0MS01 117 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 IGKV1-6A0A0C4DH72 117 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 ZNF729A6NN14 1252 aaPredicted RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 J3QRK9 145 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 SLC22A1O15245 554 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 CLPXO76031 633 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 NDUFA7O95182 113 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 PAHP00439 452 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 HBZP02008 142 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 PRB2P02812 416 aaPredicted RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 CRYBA1P05813 215 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 FCER2P06734 321 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 SCTP09683 121 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 GTF2F2P13984 249 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 GADD45AP24522 165 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 CALRP27797 417 aaKnown RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 HTR1DP28221 377 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 BLVRBP30043 206 aaPredicted RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 ARL3P36405 182 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 OR3A3P47888 321 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 VEGFCP49767 419 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 BPIFB3P59826 476 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 LSM3P62310 102 aaKnown RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 RPS27AP62979 156 aaKnown RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 PPP3R1P63098 170 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 BDH1Q02338 343 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 MXD1Q05195 221 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 MLLT11Q13015 90 aaPredicted RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 MADCAM1Q13477 382 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 GPR50Q13585 617 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 NEDD8Q15843 81 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 HLA-DRB5Q30154 266 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 MORN2Q502X0 79 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 HSD17B12Q53GQ0 312 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 TPTE2P1Q5T6R2 138 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 UBE2UQ5VVX9 321 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 NCR3LG1Q68D85 454 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 GLDNQ6ZMI3 551 aaPredicted RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 ODF3L1Q8IXM7 274 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 Q8IYB0 196 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 GAPTQ8N292 157 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 MS4A15Q8N5U1 240 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 TMEM86BQ8N661 226 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 ZNF439Q8NDP4 499 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 OR13D1Q8NGV5 346 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 NDNFQ8TB73 568 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 UFD1Q92890 307 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 ST6GALNAC6Q969X2 333 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 ARHGAP5-AS1Q96IT6 56 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 HARBI1Q96MB7 349 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 CMTM3Q96MX0 182 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 NOL4LQ96MY1 436 aaPredicted RBP3.34□□□□□ -1.87
SPG11-211ENST00000558561 CITED1Q99966 193 aa3.34□□□□□ -1.87
SPG11-211ENST00000558561 CHCHD6Q9BRQ6 235 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms