RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 BEST4Q8NFU0 473 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OR10AD1Q8NGE0 317 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OR5AP2Q8NGF4 316 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OR5H2Q8NGV7 314 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OR6F1Q8NGZ6 308 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OR4K15Q8NH41 348 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OR56B4Q8NH76 319 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 LRRC29Q8WV35 223 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ITLN1Q8WWA0 313 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 MARVELD1Q9BSK0 173 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 FAAP24Q9BTP7 215 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ST6GALNAC5Q9BVH7 336 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ALX4Q9H161 411 aaPredicted RBP4.24□□□□□ -1.73
LDLR-209ENST00000558528 ZNF665Q9H7R5 613 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 C12orf4Q9NQ89 552 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 NECAP2Q9NVZ3 263 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 MCUBQ9NWR8 336 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 SLC2A8Q9NY64 477 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 MSRB1Q9NZV6 116 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 OPN4Q9UHM6 478 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 TBC1D24Q9ULP9 559 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 ANAPC10Q9UM13 185 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 PPP1R3CQ9UQK1 317 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 TMED3Q9Y3Q3 217 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 WIPI2Q9Y4P8 454 aa4.24□□□□□ -1.73
LDLR-209ENST00000558528 KIAA1549Q9HCM3 1950 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 CNTRLQ7Z7A1 2325 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 PPIAL4EA0A075B759 164 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 A0A0A6YYD4 124 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 LINC00854A0A1B0GVQ3 168 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TMEM30CPA0ZSE6 113 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TMEM89A2RUT3 159 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 NKX6-3A6NJ46 265 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 OR2AT4A6NND4 320 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 DEFB108AA8MXU0 73 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TRDCB7Z8K6 153 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 PPIAL4DF5H284 164 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 INMT-MINDY4F8WBC2 141 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 MGST3O14880 152 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 SNAPC5O75971 98 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 OR2H2O95918 312 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TCRBP04435 133 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TRAPPC2P0DI81 140 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TRAPPC2BP0DI82 140 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 PPIAL4FP0DN26 164 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 ERP29P30040 261 aaKnown RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 PRDX2P32119 198 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 GLP1RP43220 463 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TMEM33P57088 247 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TAS2R31P59538 309 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 UBE2MP61081 183 aaKnown RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 PAX5Q02548 391 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TLE4Q04727 773 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 SSX2Q16385 188 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TMEM30BQ3MIR4 351 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 PIGYQ3MUY2 71 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 MOGAT2Q3SYC2 334 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 PAN3Q58A45 887 aaKnown RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 DMRTC1Q5HYR2 192 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 RSBN1Q5VWQ0 802 aaPredicted RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 PRAMEF6Q5VXH4 476 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TEX36Q5VZQ5 186 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 FAHD2BQ6P2I3 314 aaPredicted RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 C6orf201Q7Z4U5 140 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 C11orf53Q8IXP5 236 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 MUC20Q8N307 709 aaPredicted RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 ZDHHC22Q8N966 263 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 SUMF2Q8NBJ7 301 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 OR4A4PQ8NGN8 299 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 MPLKIPQ8TAP9 179 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 ZFAND1Q8TCF1 268 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 RDH5Q92781 318 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 RAB1CQ92928 201 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 RAB39BQ96DA2 213 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 FAHD2AQ96GK7 314 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TIMD4Q96H15 378 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 NEURL2Q9BR09 285 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 NICN1Q9BSH3 213 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 FGF23Q9GZV9 251 aaPredicted RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 PPA2Q9H2U2 334 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TMEM106BQ9NUM4 274 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 UFSP2Q9NUQ7 469 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 ZNF701Q9NV72 531 aaPredicted RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 AK3Q9UIJ7 227 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 ANXA10Q9UJ72 324 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 TRAPPC2LQ9UL33 140 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 CHTOPQ9Y3Y2 248 aaKnown RBP4.23□□□□□ -1.73
LDLR-209ENST00000558528 PPIAL4AQ9Y536 164 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 MPDZO75970 2070 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 NBEAL2Q6ZNJ1 2754 aa4.23□□□□□ -1.73
LDLR-209ENST00000558528 FREM3P0C091 2139 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 TLN2Q9Y4G6 2542 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 IGHV1-69-2A0A0G2JMI3 117 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 MEIOCA2RUB1 952 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 RFPL4AA6NLU0 287 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 SNRPGP15A8MWD9 76 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 RFPL4AL1F8VTS6 287 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 BOLA2-SMG1P6H3BVE0 249 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 PFDN1O60925 122 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 SLC22A5O76082 557 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms