RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 IGKV1D-39P04432 117 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 OR3A1P47881 315 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 CYP2G1PQ6ZSU1 146 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 NEIL1Q96FI4 390 aaPredicted RBP9.62□□□□□ -0.87
LDLR-208ENST00000558518 CTDSP1Q9GZU7 261 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 SERTAD4Q9NUC0 356 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 POLR3KQ9Y2Y1 108 aaPredicted RBP9.62□□□□□ -0.87
LDLR-208ENST00000558518 NXPH2O95156 264 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 GCGP01275 180 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 RND2P52198 227 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 ACTR3CQ9C0K3 210 aaPredicted RBP9.62□□□□□ -0.87
LDLR-208ENST00000558518 CDH20Q9HBT6 801 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 TMEM9BQ9NQ34 198 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 PKDREJQ9NTG1 2253 aa9.62□□□□□ -0.87
LDLR-208ENST00000558518 IGLV3-1P01715 115 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 RAC1P63000 192 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 LRRC75BQ2VPJ9 315 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 SPINK14Q6IE38 97 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 Q6ZVH6 145 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 TUSC5Q8IXB3 177 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 FAM58AQ8N1B3 248 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 RBM14Q96PK6 669 aaKnown RBP9.61□□□□□ -0.87
LDLR-208ENST00000558518 EP300Q09472 2414 aaPredicted RBP9.61□□□□□ -0.87
LDLR-208ENST00000558518 COX5AP20674 150 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 IER3P46695 156 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 FGF12P61328 243 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 PCBD1P61457 104 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 EDDM3AQ14507 147 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 RNF151Q2KHN1 245 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 TIPARPQ7Z3E1 657 aaKnown RBP9.61□□□□□ -0.87
LDLR-208ENST00000558518 VKORC1L1Q8N0U8 176 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 ZNF295-AS1Q8N0V1 137 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 ZNF114Q8NC26 417 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 ABHD14BQ96IU4 210 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 IGHV5-10-1A0A0J9YXX1 117 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 B4E171 279 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 F6UZH7 168 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 CDIPTO14735 213 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 CDKN1AP38936 164 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 TSPAN7P41732 249 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 GABRA2P47869 451 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 CDC34P49427 236 aaPredicted RBP9.61□□□□□ -0.87
LDLR-208ENST00000558518 TNFSF10P50591 281 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 PLP2Q04941 152 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 NINJ1Q92982 152 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 DIRC2Q96SL1 478 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 NEU1Q99519 415 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 TMEM208Q9BTX3 173 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 FGF23Q9GZV9 251 aaPredicted RBP9.61□□□□□ -0.87
LDLR-208ENST00000558518 OR6C3Q9NZP0 311 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 FZR1Q9UM11 496 aa9.61□□□□□ -0.87
LDLR-208ENST00000558518 RAC2P15153 192 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 ADMP35318 185 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 LTBRP36941 435 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 ERVFC1-1P60608 527 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 LPAL2Q16609 132 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 ACOT6Q3I5F7 207 aaPredicted RBP9.6□□□□□ -0.87
LDLR-208ENST00000558518 ARSJQ5FYB0 599 aaPredicted RBP9.6□□□□□ -0.87
LDLR-208ENST00000558518 NUFIP2Q7Z417 695 aaKnown RBP9.6□□□□□ -0.87
LDLR-208ENST00000558518 OR52L2PQ8NGH6 319 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 TMEM170AQ8WVE7 144 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 C10orf35Q96D05 121 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 TXN2Q99757 166 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 VAMP8Q9BV40 100 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 C11orf1Q9H5F2 150 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 DEPPQ9NTK1 212 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 DLL3Q9NYJ7 618 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 PCNX1Q96RV3 2341 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 DUXBA0A1W2PPF3 345 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 F2Z2F3 143 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 FCN1O00602 326 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 CBR3O75828 277 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 RPLP1P05386 114 aaKnown RBP9.6□□□□□ -0.87
LDLR-208ENST00000558518 FRMD6-AS1P0C7T7 363 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 RAC3P60763 192 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 PDLIM3Q53GG5 364 aaPredicted RBP9.6□□□□□ -0.87
LDLR-208ENST00000558518 ST6GALNAC3Q8NDV1 305 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 OR1L1Q8NH94 360 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 PINX1Q96BK5 328 aaKnown RBP9.6□□□□□ -0.87
LDLR-208ENST00000558518 LRP4O75096 1905 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 HOXA6P31267 233 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 OR8B8Q15620 311 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 TRIM61Q5EBN2 209 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 SLC25A53Q5H9E4 307 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 DRAM1Q8N682 238 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 OR8G5Q8NG78 346 aa9.6□□□□□ -0.87
LDLR-208ENST00000558518 TRAV24A0A0B4J272 114 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 MKRN2OSH3BPM6 223 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 S1PR2O95136 353 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 CELA3AP09093 270 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 PCSK4Q6UW60 755 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 LINC00696Q6ZRV3 163 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 H2BFWTQ7Z2G1 175 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 MRGPRDQ8TDS7 321 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 HES7Q9BYE0 225 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 LOC102724200A0A096LPH7 203 aaPredicted RBP9.59□□□□□ -0.87
LDLR-208ENST00000558518 CTXND1A0A1B0GTU2 59 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 CTXN2P0C2S0 81 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 CRISP2P16562 243 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 HTD2P86397 168 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms