RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RUNX1Q01196 453 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 TNFRSF9Q07011 255 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 EIF4EBP1Q13541 118 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 LRRC75BQ2VPJ9 315 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 DEFB109BQ30KR1 87 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 SP5Q6BEB4 398 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 IGFL3Q6UXB1 125 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 FGFRL1Q8N441 504 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF561Q8N587 486 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 OR1L1Q8NH94 360 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 CLDND2Q8NHS1 167 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 SFT2D1Q8WV19 159 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 TCTEX1D2Q8WW35 142 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 HIST1H2BAQ96A08 127 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 MALSU1Q96EH3 234 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 COQ2Q96H96 371 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 CLCC1Q96S66 551 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-206ENST00000558338 JPT1Q9UK76 154 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 DOCK7Q96N67 2140 aa6.09□□□□□ -1.43
VPS13C-206ENST00000558338 LOC102723971A0A1B0GUV8 181 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 A0A1B0GV50 99 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 FAM90A9PA6NNJ1 464 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 B4DEV8 164 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 WNT9BO14905 357 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 SOX15O60248 233 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 PTBP3O95758 552 aaKnown RBP6.09□□□□□ -1.44
VPS13C-206ENST00000558338 CGAP01215 116 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 MBP02144 154 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 SRP19P09132 144 aaKnown RBP6.09□□□□□ -1.44
VPS13C-206ENST00000558338 METTL15P1P0C7V9 234 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 P0C879 139 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 CFHR2P36980 270 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 CEBPDP49716 269 aaPredicted RBP6.09□□□□□ -1.44
VPS13C-206ENST00000558338 RELBQ01201 579 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 COL10A1Q03692 680 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 AESQ08117 197 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 SLC38A11Q08AI6 406 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 TMEM41BQ5BJD5 291 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 TIMM23BQ5SRD1 257 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 PRAMEF6Q5VXH4 476 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 TMEM14EPQ6UXP3 125 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 Q6ZRM9 215 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF826PQ6ZT77 177 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 SLC35E3Q7Z769 313 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 LINC00518Q8N0U6 118 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 LRRC29Q8WV35 223 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 MBD3L1Q8WWY6 194 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 STARD4Q96DR4 205 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 P2RX4Q99571 388 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 NIPSNAP3BQ9BS92 247 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 TMEM147Q9BVK8 224 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 WDR61Q9GZS3 305 aaKnown RBP6.09□□□□□ -1.44
VPS13C-206ENST00000558338 RBKSQ9H477 322 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 SIRT7Q9NRC8 400 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 CISD1Q9NZ45 108 aaKnown RBP6.09□□□□□ -1.44
VPS13C-206ENST00000558338 SLC25A15Q9Y619 301 aa6.09□□□□□ -1.44
VPS13C-206ENST00000558338 LRRC30A6NM36 301 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 SRRM5B3KS81 715 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 MGST3O14880 152 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 CLDN1O95832 211 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 CRYABP02511 175 aaKnown RBP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 S100A6P06703 90 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 WT1P19544 449 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 GZMHP20718 246 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 MAS1LP35410 378 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 KIR2DS2P43631 304 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 FABP6P51161 128 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 PNRC1Q12796 327 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 FOXF2Q12947 444 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 SRSF6Q13247 344 aaKnown RBP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 ICAM4Q14773 271 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 HAGHQ16775 308 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 CT83Q5H943 113 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 SPANXN5Q5MJ07 72 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 Q6ZR03 302 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 H2BFWTQ7Z2G1 175 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 OR52L2PQ8NGH6 319 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 MRGPRDQ8TDS7 321 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 TVP23CQ96ET8 276 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 SNX22Q96L94 193 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 ATP6V0BQ99437 205 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 ABHD14AQ9BUJ0 271 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 MRPL37Q9BZE1 423 aaKnown RBP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 OPN3Q9H1Y3 402 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 NCOR1P1Q9H4R4 102 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 PUS1Q9Y606 427 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS13C-206ENST00000558338 CACNA1GO43497 2377 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 PCNX2A6NKB5 2137 aa6.08□□□□□ -1.44
VPS13C-206ENST00000558338 A0A0U1RQK1 487 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 MED19A0JLT2 244 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF320A2RRD8 509 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 CXorf65A6NEN9 183 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 H3BQ15 152 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 OR2C1O95371 312 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 IFNA17P01571 189 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 IGHV3-13P01766 116 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 BCL2P10415 239 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RAB5AP20339 215 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms