RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 LTC4SQ16873 150 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 OR2C3Q8N628 320 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 DMBX1Q8NFW5 382 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 RNF141Q8WVD5 230 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 CCL17Q92583 94 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 GPR146Q96CH1 333 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 HCFC1P51610 2035 aa13.97□□□□□ -0.17
LDLR-206ENST00000557958 ZNF729A6NN14 1252 aaPredicted RBP13.96□□□□□ -0.17
LDLR-206ENST00000557958 CAV2P51636 162 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 POLR2GP62487 172 aaKnown RBP eCLIP13.96□□□□□ -0.17
LDLR-206ENST00000557958 BTN1A1Q13410 526 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 ZNF585BQ52M93 769 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 FAM122CQ6P4D5 195 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 STPG2Q8N412 459 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 FAM216BQ8N7L0 139 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 AGMATQ9BSE5 352 aa13.96□□□□□ -0.17
LDLR-206ENST00000557958 TSPAN4O14817 238 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 ST8SIA5O15466 376 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 PITX3O75364 302 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 CGB3P0DN86 165 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 CGB7P0DN87 165 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 SELLP14151 372 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 LPAR6P43657 344 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 LOXL3P58215 753 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 MEF2CQ06413 473 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 EIF4EBP1Q13541 118 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 Q3ZCU0 254 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 ZNF672Q499Z4 452 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 CXorf66Q5JRM2 361 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 FAM74A1Q5RGS3 127 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 CORO2AQ92828 525 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 RAB40CQ96S21 281 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 BARX1Q9HBU1 254 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 LYRM2Q9NU23 88 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 COA4Q9NYJ1 87 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 LPAR3Q9UBY5 353 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 PRELID1Q9Y255 219 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 MMP24Q9Y5R2 645 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 IGKV1-39P01597 117 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 IGKV1D-39P04432 117 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 NDUFB7P17568 137 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 BAXQ07812 192 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 RPL7L1Q6DKI1 246 aaKnown RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 SPAG16Q8N0X2 631 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 MUC15Q8N387 334 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 UBAC2Q8NBM4 344 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 GAL3ST2Q9H3Q3 398 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 SLC25A10Q9UBX3 287 aaPredicted RBP13.95□□□□□ -0.18
LDLR-206ENST00000557958 CACNG5Q9UF02 275 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 LINC00312Q9Y6C7 94 aa13.95□□□□□ -0.18
LDLR-206ENST00000557958 KIAA2026Q5HYC2 2103 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 IGHV1-69-2A0A0G2JMI3 117 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 MEX3AA1L020 520 aaKnown RBP13.94□□□□□ -0.18
LDLR-206ENST00000557958 NDUFA2O43678 99 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 RPL23AP62750 156 aaKnown RBP13.94□□□□□ -0.18
LDLR-206ENST00000557958 FGFRL1Q8N441 504 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.94□□□□□ -0.18
LDLR-206ENST00000557958 TMED6Q8WW62 240 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 AIFM2Q9BRQ8 373 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 C11orf1Q9H5F2 150 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 LINC00574Q9H8X3 128 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 GFOD1Q9NXC2 390 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 TAS2R3Q9NYW6 316 aa13.94□□□□□ -0.18
LDLR-206ENST00000557958 DYSFO75923 2080 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 FAM90A26D6RGX4 464 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 IGKV1-5P01602 117 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 EWSR1Q01844 656 aaKnown RBP eCLIP13.93□□□□□ -0.186e-6■■■■□ 22.1
LDLR-206ENST00000557958 C17orf58Q2M2W7 97 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 MST1LQ2TV78 715 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 HFEQ30201 348 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 LRRC10Q5BKY1 277 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 BTNL3Q6UXE8 466 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 TGIF2LYQ8IUE0 185 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 ABHD14AQ9BUJ0 271 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 MAGT1Q9H0U3 335 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 DCAF16Q9NXF7 216 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 ICE1Q9Y2F5 2266 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 A0A0G2JRQ6 117 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 NDUFB3O43676 98 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 LOXP28300 417 aaPredicted RBP13.93□□□□□ -0.18
LDLR-206ENST00000557958 ZNF266Q14584 549 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 SWI5Q1ZZU3 235 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 DUX4L9Q6RFH8 374 aaPredicted RBP13.93□□□□□ -0.18
LDLR-206ENST00000557958 OR10A7Q8NGE5 316 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 C5orf30Q96GV9 206 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 SMIM3Q9BZL3 60 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 IDI2-AS1Q9NZ38 188 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 GAB2Q9UQC2 676 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 PRELID3BQ9Y3B1 194 aa13.93□□□□□ -0.18
LDLR-206ENST00000557958 CHST1O43916 411 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 OMGP23515 440 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 KIR2DS2P43631 304 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 RPL30P62888 115 aaKnown RBP13.92□□□□□ -0.18
LDLR-206ENST00000557958 FAM53AQ6NSI3 398 aaPredicted RBP13.92□□□□□ -0.18
LDLR-206ENST00000557958 UQCC3Q6UW78 93 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 STX12Q86Y82 276 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 TMEM204Q9BSN7 226 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 MS4A7Q9GZW8 240 aaPredicted RBP13.92□□□□□ -0.18
LDLR-206ENST00000557958 WSB1Q9Y6I7 421 aa13.92□□□□□ -0.18
LDLR-206ENST00000557958 CACNA1DQ01668 2161 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms