RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	C3orf80	F5H4A9	247 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	BMPR1B	O00238	502 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR5AL1	P0C617	328 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	LYL1	P12980	280 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	SRD5A2	P31213	254 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	STARD6	P59095	220 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	LYZ	P61626	148 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	QRFP	P83859	136 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	LRRC75B	Q2VPJ9	315 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	WDFY1	Q8IWB7	410 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	ATP23	Q9Y6H3	246 aa		4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF106	Q9H2Y7	1883 aa	Known RBP	4.27	□□□□□ -1.73
SYNE2-223	ENST00000557005	TRGV10	A0A0A0MS01	117 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV1-9	A0A0C4DH69	117 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A0J9YW62	118 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PMS2P1	A4D2B8	440 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	C1QTNF9B	B2RNN3	333 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	C5orf67	F2Z3F1	127 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005		K7N7A8	449 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	RAB29	O14966	203 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TFF1	P04155	84 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	FGF5	P12034	268 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	SRI	P30626	198 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	BRS3	P32247	399 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ERVFRD-1	P60508	538 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ACTL10	Q5JWF8	245 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	VWA1	Q6PCB0	445 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF501	Q96CX3	271 aa	Predicted RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PGLYRP4	Q96LB8	373 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	NPCDR1	Q9BY65	106 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	COMMD5	Q9GZQ3	224 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	SEBOX	Q9HB31	216 aa	Predicted RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TEX50	A0A1B0GTY4	177 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR4C46	A6NHA9	309 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PROB1	E7EW31	1015 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	EREG	O14944	169 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	SYNGR3	O43761	229 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	GDF9	O60383	454 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	HBZ	P02008	142 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF83	P51522	516 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	RPL23	P62829	140 aa	Known RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	HES1	Q14469	280 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PMCHL1	Q16048	86 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM170A	Q8WVE7	144 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	RCC1L	Q96I51	464 aa	Known RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	RNF2	Q99496	336 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A0G2JMM0	328 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A1W2PPB8	328 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A1W2PRS3	328 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	KIR3DP1	A8MWS1	328 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TIAF1	O95411	115 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	NUTF2	P61970	127 aa	Known RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF718	Q3SXZ3	478 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PYY3	Q5JQD4	70 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM162B	Q5T6X4	162 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PRNT	Q86SH4	94 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	PDPN	Q86YL7	162 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	FGFRL1	Q8N441	504 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	GBGT1	Q8N5D6	347 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR4B1	Q8NGF8	309 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	SLC25A40	Q8TBP6	338 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	LEAP2	Q969E1	77 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	CRISPLD2	Q9H0B8	497 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TINAG	Q9UJW2	476 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV1D-13	A0A0B4J2D9	117 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGHV2-70	P01814	119 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	AMBP	P02760	352 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV3-11	P04433	115 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IFI6	P09912	130 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV1-13	P0DP09	117 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	SERF2	P84101	59 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	HERPUD1	Q15011	391 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR8G5	Q8NG78	346 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF837	Q96EG3	531 aa	Predicted RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	MESP1	Q9BRJ9	268 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	CHRDL1	Q9BU40	450 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM167B	Q9NRX6	74 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	MYO10	Q9HD67	2058 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	LRRC30	A6NM36	301 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	WISP1	O95388	367 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	BTF3	P20290	206 aa	Known RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IL3RA	P26951	378 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	RAC3	P60763	192 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	ARL16	Q0P5N6	197 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	IBA57	Q5T440	356 aa	Known RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM27B	Q5VT28	67 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TEPP	Q6URK8	271 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	SP7	Q8TDD2	431 aa	Predicted RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	TBL2	Q9Y4P3	447 aa	Known RBP	4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	MPC1	Q9Y5U8	109 aa		4.26	□□□□□ -1.73
SYNE2-223	ENST00000557005	COL4A3	Q01955	1670 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005		E9PLN8	166 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005		K7ESF4	209 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005		P01737	135 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	CD55	P08174	381 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	SRF	P11831	508 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	TFPI2	P48307	235 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	RNPS1	Q15287	305 aa	Known RBP	4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF766	Q5HY98	468 aa		4.25	□□□□□ -1.73

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