RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RCC1LQ96I51 464 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 RHOVQ96L33 236 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 LRP4O75096 1905 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 A0A1B0GU03 582 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 C17orf98A8MV24 154 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 LINC01387J3KSC0 135 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 SCGB1D1O95968 90 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 APELAP0DMC3 54 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 COX5AP20674 150 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 RNFT1Q5M7Z0 435 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF383Q8NA42 475 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNRF1Q8ND25 227 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 YLPM1P49750 1951 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF320A2RRD8 509 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 CXCL1P09341 107 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 BCL2P10415 239 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 FDCSPQ8NFU4 85 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 SSC4DQ8WTU2 575 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 ACTR3CQ9C0K3 210 aaPredicted RBP10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 TLN1Q9Y490 2541 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 TNCP24821 2201 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 FOXI3A8MTJ6 420 aaPredicted RBP10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 C12orf77C9JDV5 145 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 PSPNO60542 156 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 TMEM241Q24JQ0 296 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 SMIM21Q3B7S5 101 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 TMEM42Q69YG0 159 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 PPP1R35Q8TAP8 253 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 GPR87Q9BY21 358 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 HIPK2Q9H2X6 1198 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 ANAPC10Q9UM13 185 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 ATRXP46100 2492 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 OTOGLQ3ZCN5 2332 aa10.28□□□□□ -0.76
CCDC88C-211ENST00000556726 BTBD17A6NE02 478 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 IL18BPO95998 194 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 IGHV3-48P01763 117 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 ARL16Q0P5N6 197 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 Q6ZPA2 131 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 RND1Q92730 232 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 PROCRQ9UNN8 238 aa10.27□□□□□ -0.76
CCDC88C-211ENST00000556726 WISP2O76076 250 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 TFF3Q07654 80 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 ICAM4Q14773 271 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 BSXQ3C1V8 233 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 GCSAMLQ5JQS6 135 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM209BQ5JX69 171 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 SPNS3Q6ZMD2 512 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 R3HDM4Q96D70 268 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 SPRR3Q9UBC9 169 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 METRNQ9UJH8 293 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 IGLV3-1P01715 115 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 HSPB1P04792 205 aaKnown RBP10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 IRF2P14316 349 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 TMEM41BQ5BJD5 291 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM78BQ5VT40 261 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 WFDC8Q8IUA0 241 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 TAF15Q92804 592 aaKnown RBP eCLIP10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 S1PR3Q99500 378 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 ZNF251Q9BRH9 671 aa10.27□□□□□ -0.77
CCDC88C-211ENST00000556726 PGPEP1LA6NFU8 196 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 M0R296 226 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 ENSAO43768 121 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 MGST1P10620 155 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 LYL1P12980 280 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 GALR1P47211 349 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 THBS3P49746 956 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 ERVFRD-1P60508 538 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 ID3Q02535 119 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 ABHD12Q8N2K0 398 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 TMEM56Q96MV1 263 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 FUT9Q9Y231 359 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 TMEM56-RWDD3S4R434 201 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 NAPSAO96009 420 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 KITLGP21583 273 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 REG1BP48304 166 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 SSX2Q16385 188 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 RPL39P5Q59GN2 51 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 C16orf82Q7Z2V1 217 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 MUC6Q6W4X9 2439 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 ODAMA1E959 279 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 C17orf112F2Z3M2 114 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 OR7C2O60412 319 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 TRGC1P0CF51 173 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 SELLP14151 372 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 IGHV1-2P23083 117 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 SLC35B1P78383 322 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 OR51G1Q8NGK1 321 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 OR13A1Q8NGR1 328 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 PCGF1Q9BSM1 259 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 LRFN3Q9BTN0 628 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 IL36GQ9NZH8 169 aa10.26□□□□□ -0.77
CCDC88C-211ENST00000556726 IGKV1-5P01602 117 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 CDC34P49427 236 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 TNFRSF9Q07011 255 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 FOXL2NBQ6ZUU3 175 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM214BQ7L5A3 538 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 Q8IYB0 196 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 ZCCHC24Q8N2G6 241 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 SARAFQ96BY9 339 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 GSN-AS1Q9NRJ2 163 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms