RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NPIPB13A6NJU9 1138 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF716A6NP11 495 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF732B4DXR9 585 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 NPIPB4C9JG80 1138 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 TRAF3IP2O43734 574 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 VAMP5O95183 116 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 TTRP02766 147 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 PFN1P07737 140 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 CD55P08174 381 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 DBHP09172 617 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 CLRN1P58418 232 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 HIST1H3AP68431 136 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ARL6IP1Q15041 203 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 RNPS1Q15287 305 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ABCA11PQ4W5N1 156 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 COL5A1-AS1Q5SY13 56 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 DEGS2Q6QHC5 323 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 LINC00346Q8IVM7 164 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 CPEB3Q8NE35 698 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 OR51T1Q8NGJ9 327 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM37Q8WXS4 190 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 REEP6Q96HR9 211 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 OR5B12Q96R08 314 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 TBX15Q96SF7 602 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 KCNK17Q96T54 332 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 C20orf144Q9BQM9 153 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 CISD1Q9NZ45 108 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 IGKV1D-43A0A0B4J1Z2 117 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 TRAV1-1A0A0B4J248 108 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 IGHG1P01857 330 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 BCL2P10415 239 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 MMP9P14780 707 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 CDKN1BP46527 198 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ERVS71-1P61550 626 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 RANP62826 216 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 FMODQ06828 376 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ACTL10Q5JWF8 245 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 KLHL24Q6TFL4 600 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 LIAT1Q6ZQX7 453 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 C16orf82Q7Z2V1 217 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 RNF144BQ7Z419 303 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF100Q8IYN0 542 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 LGI3Q8N145 548 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 C11orf42Q8N5U0 333 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 LRTM2Q8N967 370 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 NECAP1Q8NC96 275 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 RNASE8Q8TDE3 154 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 C18orf12Q96KH6 178 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 WFIKKN1Q96NZ8 548 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 GPER1Q99527 375 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ELOVL1Q9BW60 279 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 MRPL13Q9BYD1 178 aaKnown RBP6.5□□□□□ -1.37
LIMA1-216ENST00000552909 PBOV1Q9GZY1 135 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 PLEKHF2Q9H8W4 249 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 GLRX2Q9NS18 164 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 FAM206AQ9NX38 181 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 PRSS50Q9UI38 385 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 FUT9Q9Y231 359 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 ARID1AO14497 2285 aa6.5□□□□□ -1.37
LIMA1-216ENST00000552909 C20orf202A1L168 122 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 IGSF23A1L1A6 192 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 ZFP92A6NM28 416 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 SERPINE3A8MV23 424 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 DNPH1O43598 174 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 IGHV3-9P01782 118 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 ZNF728P0DKX0 622 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 OMGP23515 440 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 BLVRBP30043 206 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-216ENST00000552909 GALR1P47211 349 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 RAB7AP51149 207 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 ADIRFQ15847 76 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM241Q24JQ0 296 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 LEMD1Q68G75 181 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 ETFRF1Q6IPR1 90 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 FAM89BQ8N5H3 189 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 ZIC4Q8N9L1 334 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 OR4D5Q8NGN0 318 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 OR5C1Q8NGR4 320 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 TMEM171Q8WVE6 324 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 RTN4IP1Q8WWV3 396 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-216ENST00000552909 NRGNQ92686 78 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 TOMM40LQ969M1 308 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 MS4A10Q96PG2 267 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 P2RX4Q99571 388 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 PECRQ9BY49 303 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 Q9N2K0 584 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 DECR2Q9NUI1 292 aa6.49□□□□□ -1.37
LIMA1-216ENST00000552909 IGKV3D-15A0A087WSY6 115 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 IGKV1D-8A0A087WSZ0 117 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 H7BYZ3 331 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 HNF1AP20823 631 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 CNN1P51911 297 aaKnown RBP6.48□□□□□ -1.37
LIMA1-216ENST00000552909 FOXG1P55316 489 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-216ENST00000552909 GNB2P62879 340 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 PRDX4Q13162 271 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 DNM1P34Q6PK57 102 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 COMMD2Q86X83 199 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 H1FOOQ8IZA3 346 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-216ENST00000552909 OR5AS1Q8N127 324 aa6.48□□□□□ -1.37
LIMA1-216ENST00000552909 OR51G1Q8NGK1 321 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms