RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PFDN6O15212 129 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 TRAPPC3O43617 180 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 IL6P05231 212 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 CD7P09564 240 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 CRYBB3P26998 211 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 ATP6V0CP27449 155 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 FUSP35637 526 aaKnown RBP eCLIP1.82□□□□□ -2.12
VPS29-205ENST00000548539 CD79BP40259 229 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 SERPINB10P48595 397 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 MED21Q13503 144 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 JOSD1Q15040 202 aaPredicted RBP1.82□□□□□ -2.12
VPS29-205ENST00000548539 TMEM176BQ3YBM2 270 aaPredicted RBP1.82□□□□□ -2.12
VPS29-205ENST00000548539 CST9Q5W186 159 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 TCF24Q7RTU0 167 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 IQCF2Q8IXL9 164 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 BAP18Q8IXM2 172 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 TMEM156Q8N614 296 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 PACRGLQ8N7B6 248 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 C16orf78Q8WTQ4 265 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 TMBIM1Q969X1 311 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 OR52B2Q96RD2 323 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 STACQ99469 402 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 C11orf1Q9H5F2 150 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 SLC2A9Q9NRM0 540 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 NKIRAS1Q9NYS0 192 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 HHLA2Q9UM44 414 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 HIVEP2P31629 2446 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 A0A1W2PP64 1363 aa1.82□□□□□ -2.12
VPS29-205ENST00000548539 ADAMTSL1Q8N6G6 1762 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 TEX50A0A1B0GTY4 177 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 DHRS12A0PJE2 317 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 ODF3BA8MYP8 253 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 SSNA1O43805 119 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 DEXIO95424 95 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 CSRP1P21291 193 aaKnown RBP1.81□□□□□ -2.12
VPS29-205ENST00000548539 BLVRBP30043 206 aaPredicted RBP1.81□□□□□ -2.12
VPS29-205ENST00000548539 CDC34P49427 236 aaPredicted RBP1.81□□□□□ -2.12
VPS29-205ENST00000548539 TMEM33P57088 247 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 TAS2R45P59539 299 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 KRTAP12-3P60328 96 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 FABP5Q01469 135 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 MLLT11Q13015 90 aaPredicted RBP1.81□□□□□ -2.12
VPS29-205ENST00000548539 LRRC34Q8IZ02 419 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 OR4C16Q8NGL9 310 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 EEF1AKMT1Q8WVE0 214 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 TMEM109Q9BVC6 243 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 MND1Q9BWT6 205 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 TXNL4BQ9NX01 149 aaKnown RBP1.81□□□□□ -2.12
VPS29-205ENST00000548539 EMC3Q9P0I2 261 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 CCL26Q9Y258 94 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 MMACHCQ9Y4U1 282 aa1.81□□□□□ -2.12
VPS29-205ENST00000548539 PCYT1BQ9Y5K3 369 aaPredicted RBP1.81□□□□□ -2.12
VPS29-205ENST00000548539 CHD2O14647 1828 aaKnown RBP1.8□□□□□ -2.12
VPS29-205ENST00000548539 MDFIC2A0A1B0GVS7 189 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 M0QZ92 97 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 UBE2L6O14933 153 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 ZNF189O75820 626 aaPredicted RBP1.8□□□□□ -2.12
VPS29-205ENST00000548539 REG1AP05451 166 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 NPPCP23582 126 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 CRHBPP24387 322 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 GABRA4P48169 554 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 CXCR4P61073 352 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 HLA-DRB3P79483 266 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 CDKL4Q5MAI5 379 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 AMTNQ6UX39 209 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 FNDC9Q8TBE3 224 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 MAP1LC3AQ9H492 121 aa1.8□□□□□ -2.12
VPS29-205ENST00000548539 LCTP09848 1927 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 TMED7-TICAM2A0A0A6YYA0 188 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 TRGV4A0A0C4DH28 118 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 C5orf49A4QMS7 147 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 FNDC10F2Z333 226 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 H0Y980 276 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 HLA-DRAP01903 254 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 OCM2P0CE71 109 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 CCL3P10147 92 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 CTBP2P56545 445 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 SNAP25P60880 206 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 MGAT3Q09327 533 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 SAPCD1Q5SSQ6 148 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 LGALS9CQ6DKI2 356 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 C2orf91Q6ZV80 131 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 COMMD7Q86VX2 200 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 Q8N402 240 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 DAND5Q8N907 189 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 OR2D3Q8NGH3 330 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 PHOSPHO2Q8TCD6 241 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 RPS4Y2Q8TD47 263 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 FGF13Q92913 245 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 MBOAT7Q96N66 472 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 FGFR1OP2Q9NVK5 253 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 PLCH2O75038 1416 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 ATAD5Q96QE3 1844 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 CACNA1SQ13698 1873 aa1.79□□□□□ -2.12
VPS29-205ENST00000548539 C17orf51A8MQB3 221 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 OR11H12B2RN74 326 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 SLC17A3O00476 420 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 HLA-DQB2P05538 268 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 P0DMU3 169 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 FAM231AP0DMU4 169 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms