RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EI24O14681 340 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 BRI3O95415 125 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 BAG2O95816 211 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 RASSF2P50749 326 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 ZNF343Q6P1L6 599 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 BVESQ8NE79 360 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 DYNLRB2Q8TF09 96 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 ST6GALNAC5Q9BVH7 336 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 SRD5A3Q9H8P0 318 aa12.83□□□□□ -0.36
VPS29-204ENST00000548259 CHMP1AQ9HD42 196 aaPredicted RBP12.83□□□□□ -0.36
VPS29-204ENST00000548259 MRPS18AQ9NVS2 196 aaKnown RBP12.83□□□□□ -0.36
VPS29-204ENST00000548259 IZUMO1RA6ND01 250 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 NUPR2A6NF83 97 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 OR11H12B2RN74 326 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 ITGB1BP1O14713 200 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 LIMS3P0CW19 117 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 LIMS4P0CW20 117 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 FSTP19883 344 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 ALDH3A2P51648 485 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 YIF1BQ5BJH7 314 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 MOB1BQ7L9L4 216 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 PDPNQ86YL7 162 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 RHOXF1Q8NHV9 184 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 KCTD12Q96CX2 325 aaKnown RBP12.82□□□□□ -0.36
VPS29-204ENST00000548259 ORAI1Q96D31 301 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 OR14A2Q96R54 314 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 TINAGL1Q9GZM7 467 aaPredicted RBP12.82□□□□□ -0.36
VPS29-204ENST00000548259 BABAM2Q9NXR7 383 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 AASSQ9UDR5 926 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 ALMS1Q8TCU4 4167 aa12.82□□□□□ -0.36
VPS29-204ENST00000548259 OGG1O15527 345 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 GABRB1P18505 474 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 MYL12AP19105 171 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 DCKP27707 260 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 MED21Q13503 144 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 XAF1Q6GPH4 301 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 SIGIRRQ6IA17 410 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 DEFB125Q8N687 156 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 NKAIN3Q8N8D7 197 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 ABHD14BQ96IU4 210 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 SULT4A1Q9BR01 284 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 COA4Q9NYJ1 87 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 ZNF221Q9UK13 617 aa12.81□□□□□ -0.36
VPS29-204ENST00000548259 PLECQ15149 4684 aaKnown RBP12.81□□□□□ -0.36
VPS29-204ENST00000548259 TRAV8-7A0A075B6U6 113 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 TRBV5-5A0A0J9YX44 114 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 IRGMA1A4Y4 181 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 CIB2O75838 187 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 ZBTB25P24278 435 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 CBX3Q13185 183 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 GUCA2BQ16661 112 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 CD300EQ496F6 205 aaPredicted RBP12.8□□□□□ -0.36
VPS29-204ENST00000548259 SLC16A13Q7RTY0 426 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 SETD6Q8TBK2 473 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 THRSPQ92748 146 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 FAM46BQ96A09 425 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 UQCC2Q9BRT2 126 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 FGF20Q9NP95 211 aaPredicted RBP12.8□□□□□ -0.36
VPS29-204ENST00000548259 MGAT4AQ9UM21 535 aa12.8□□□□□ -0.36
VPS29-204ENST00000548259 IGKV1-16P04430 117 aa12.79□□□□□ -0.36
VPS29-204ENST00000548259 UBBP0CG47 229 aa12.79□□□□□ -0.36
VPS29-204ENST00000548259 MECP2P51608 486 aaKnown RBP12.79□□□□□ -0.36
VPS29-204ENST00000548259 FAM209BQ5JX69 171 aa12.79□□□□□ -0.36
VPS29-204ENST00000548259 C5orf24Q7Z6I8 188 aa12.79□□□□□ -0.36
VPS29-204ENST00000548259 OR13C5Q8NGS8 318 aa12.79□□□□□ -0.36
VPS29-204ENST00000548259 PHB2Q99623 299 aa12.79□□□□□ -0.36
VPS29-204ENST00000548259 RIMS4Q9H426 269 aaPredicted RBP12.79□□□□□ -0.36
VPS29-204ENST00000548259 KLK5Q9Y337 293 aaPredicted RBP12.79□□□□□ -0.36
VPS29-204ENST00000548259 H3BNX3 289 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 TUSC2O75896 110 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 CD7P09564 240 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 CEACAM6P40199 344 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 ETV1P50549 477 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 PMS2P11Q13670 270 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 OR2G6Q5TZ20 316 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 SVOPQ8N4V2 548 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 DRAXINQ8NBI3 349 aaPredicted RBP12.78□□□□□ -0.36
VPS29-204ENST00000548259 SLC29A1Q99808 456 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 AGMATQ9BSE5 352 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 FAAP24Q9BTP7 215 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 FAM53CQ9NYF3 392 aa12.78□□□□□ -0.36
VPS29-204ENST00000548259 TECRQ9NZ01 308 aaKnown RBP12.78□□□□□ -0.36
VPS29-204ENST00000548259 NDUFB8O95169 186 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 TRBV12-3P01733 135 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 MAP2K4P45985 399 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 DYRK1AQ13627 763 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 CBR4Q8N4T8 237 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 C11orf54Q9H0W9 315 aaPredicted RBP12.77□□□□□ -0.37
VPS29-204ENST00000548259 SLC35D1Q9NTN3 355 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 ADAM30Q9UKF2 790 aa12.77□□□□□ -0.37
VPS29-204ENST00000548259 EXOSC1Q9Y3B2 195 aaKnown RBP12.77□□□□□ -0.37
VPS29-204ENST00000548259 TRBV5-7A0A0A0MS05 114 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 A0A1W2PPK0 400 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 FAM223BA6NKX1 122 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 ZNF785A8K8V0 405 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 MPPED1O15442 326 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 MAPK3P27361 379 aaPredicted RBP12.76□□□□□ -0.37
VPS29-204ENST00000548259 ATP5G2Q06055 141 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 DEFB114Q30KQ6 69 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 C6orf201Q7Z4U5 140 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms