RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RNF7Q9UBF6 113 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 VAX2Q9UIW0 290 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 hADV38S2A0JD32 116 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A10PA6NDY2 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A18PA6NE21 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A16PA6NEW6 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A20PA6NIJ5 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A8PA6NJQ4 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A7PA6NKC0 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A22PA8MWA6 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A12PA8MX19 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A5PA8MXJ8 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A23PA8MXZ1 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 PRR33A8MZF0 331 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 AP4M1O00189 453 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 GYPAP02724 150 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A15PP0C7V4 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A13PP0C7W8 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A14PP0C7W9 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A24PP0C7X0 464 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 NEIL1Q96FI4 390 aaPredicted RBP13.34□□□□□ -0.27
CUX1-211ENST00000546411 RFNGQ9Y644 331 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 COX7A2P2O60397 106 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 MPV17P39210 176 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 TAS2R45P59539 299 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 MISP3Q96FF7 219 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 LINC00470Q9BZP3 86 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 RPRMQ9NS64 109 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 LINC00596Q86U02 117 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 PKIBQ9C010 78 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 CACNA1AO00555 2505 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 TMEM210A6NLX4 147 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 COX5BP10606 129 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 ZNF705AQ6ZN79 300 aaPredicted RBP13.33□□□□□ -0.28
CUX1-211ENST00000546411 OR4P4Q8NGL7 312 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 RBKSQ9H477 322 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 ZNF835Q9Y2P0 537 aa13.33□□□□□ -0.28
CUX1-211ENST00000546411 MED13Q9UHV7 2174 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 UCP3P55916 312 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 ZGRF1Q86YA3 2104 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 CT45A6P0DMU7 189 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 CT45A5P0DMU8 189 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 CT45A7P0DMV0 189 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 EGR1P18146 543 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 TNFSF10P50591 281 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 RAB7AP51149 207 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 CT45A1Q5HYN5 189 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 ZNF439Q8NDP4 499 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 LILRB1Q8NHL6 650 aaPredicted RBP13.32□□□□□ -0.28
CUX1-211ENST00000546411 CT45A3Q8NHU0 189 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 TMEM45BQ96B21 275 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 HES4Q9HCC6 221 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 IGHV3-21A0A0B4J1V1 117 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 LILRA1O75019 489 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 CECR9P0C854 216 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 TCL1AP56279 114 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 GABRA6Q16445 453 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 SLC35E3Q7Z769 313 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 GUCD1Q96NT3 240 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 CTDSP1Q9GZU7 261 aa13.32□□□□□ -0.28
CUX1-211ENST00000546411 ZNF331Q9NQX6 463 aaPredicted RBP13.32□□□□□ -0.28
CUX1-211ENST00000546411 IGHV3-72A0A0B4J1Y9 119 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 ODAMA1E959 279 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 BCL2P10415 239 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 RPL31P62899 125 aaKnown RBP13.31□□□□□ -0.28
CUX1-211ENST00000546411 ZNF343Q6P1L6 599 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 MRGPRGQ86SM5 289 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 ZNF251Q9BRH9 671 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 TUBD1Q9UJT1 453 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 DUXBA0A1W2PPF3 345 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 FAM157AC9JC47 383 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 C12orf77C9JDV5 145 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 FABP1P07148 127 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 LHFPL1Q86WI0 220 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 BLNKQ8WV28 456 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 TAF15Q92804 592 aaKnown RBP eCLIP13.31□□□□□ -0.28
CUX1-211ENST00000546411 COL4A4P53420 1690 aaPredicted RBP13.31□□□□□ -0.28
CUX1-211ENST00000546411 LY6G6EA0A0G2JKS1 128 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 PQLC2LA1A4F0 135 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 ADH4P08319 380 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 ORM2P19652 201 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 IGHV1-2P23083 117 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 B2MP61769 119 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 ATP6V1FQ16864 119 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 WDR25Q64LD2 544 aaPredicted RBP13.31□□□□□ -0.28
CUX1-211ENST00000546411 Q6ZT83 130 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 PLPPR1Q8TBJ4 325 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 U3KQA8 63 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 TRAV38-1A0A0B4J264 116 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 SMPD2O60906 423 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 TRAT1Q6PIZ9 186 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 SAXO1Q8IYX7 474 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 BCL2L2Q92843 193 aaPredicted RBP13.31□□□□□ -0.28
CUX1-211ENST00000546411 LOXL4Q96JB6 756 aa13.31□□□□□ -0.28
CUX1-211ENST00000546411 OBSL1O75147 1896 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 CYB5R3P00387 301 aaPredicted RBP13.3□□□□□ -0.28
CUX1-211ENST00000546411 IGHV3-48P01763 117 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 SRSF6Q13247 344 aaKnown RBP13.3□□□□□ -0.28
CUX1-211ENST00000546411 ZDHHC16Q969W1 377 aa13.3□□□□□ -0.28
CUX1-211ENST00000546411 MARCH11A6NNE9 402 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms