RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PPIAL4AQ9Y536 164 aa5.15□□□□□ -1.59
SYNE1-239ENST00000545694 ADGRG4Q8IZF6 3080 aa5.15□□□□□ -1.59
SYNE1-239ENST00000545694 BORCS7-ASMTA0A0B4J1R7 106 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 KBTBD11-OT1A0A1B0GTJ5 212 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 E7EQL1 145 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 H0YIZ8 118 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 TMEM178BH3BS89 294 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 MBPP02686 304 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 OR8U9P0C7N5 309 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 CGB3P0DN86 165 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 CGB7P0DN87 165 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 RRASP10301 218 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 EGR1P18146 543 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 RPL12P30050 165 aaKnown RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 GLIPR1P48060 266 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 TAS2R30P59541 319 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 S100A10P60903 97 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 ADORA2A-AS1P86434 159 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 TAGLNQ01995 201 aaKnown RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 SNTB1Q13884 538 aaKnown RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 SP6Q3SY56 376 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF672Q499Z4 452 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 MEX3BQ6ZN04 569 aaKnown RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 BAP18Q8IXM2 172 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 DRAM1Q8N682 238 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 C8orf31Q8N9H6 132 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 UBAC2Q8NBM4 344 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 OR13A1Q8NGR1 328 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 OR8U1Q8NH10 309 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 OR1S1Q8NH92 325 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 OR1L1Q8NH94 360 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 MRGPRDQ8TDS7 321 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 CYYR1Q96J86 154 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 RAB40CQ96S21 281 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 GAL3ST2Q9H3Q3 398 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 ZC4H2Q9NQZ6 224 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 TMEM106BQ9NUM4 274 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 CISD1Q9NZ45 108 aaKnown RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 OR1A1Q9P1Q5 309 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 GNG12Q9UBI6 72 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 CLN8Q9UBY8 286 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 PFDN2Q9UHV9 154 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 KCNS2Q9ULS6 477 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 LINC00312Q9Y6C7 94 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 SESN1Q9Y6P5 492 aa5.14□□□□□ -1.59
SYNE1-239ENST00000545694 RAI1Q7Z5J4 1906 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-239ENST00000545694 TRBV23-1A0A0A0MS06 115 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 A0A1W2PPH5 198 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 RPS10-NUDT3A0A1W2PQS6 291 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 FAM90A27PA6NNH2 459 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 WRBO00258 174 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 ZG16O60844 167 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 PITX3O75364 302 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 CLDN14O95500 239 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 IGLV2-14P01704 120 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 HKR1P10072 659 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 GPR12P47775 334 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 CEBPDP49716 269 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 RAB5CP51148 216 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 VAMP2P63027 116 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 TFF3Q07654 80 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 EIF4EBP1Q13541 118 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF266Q14584 549 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 KIR3DS1Q14943 382 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 HFEQ30201 348 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 MORN2Q502X0 79 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 MIDNQ504T8 468 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 LRRC10Q5BKY1 277 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 FAM71F2Q6NXP2 309 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 MUC15Q8N387 334 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 PRR18Q8N4B5 295 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 EIF4E3Q8N5X7 224 aaKnown RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 OR2C3Q8N628 320 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 BOLLQ8N9W6 283 aaKnown RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 SYT8Q8NBV8 401 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 OR51H1Q8NH63 302 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 RNASE11Q8TAA1 199 aaKnown RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 LHFPL5Q8TAF8 219 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 NEU4Q8WWR8 484 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 SAT2Q96F10 170 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 GAFA1Q96PS6 74 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 CIB3Q96Q77 187 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 AGMATQ9BSE5 352 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 RAB1BQ9H0U4 201 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 OR2D2Q9H210 308 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 LYRM2Q9NU23 88 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 GFOD1Q9NXC2 390 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 CALYQ9NYX4 217 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 OR5AC2Q9NZP5 309 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 PRELID3BQ9Y3B1 194 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 LSM5Q9Y4Y9 91 aaKnown RBP5.13□□□□□ -1.59
SYNE1-239ENST00000545694 MMP24Q9Y5R2 645 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 WSB1Q9Y6I7 421 aa5.13□□□□□ -1.59
SYNE1-239ENST00000545694 MALRD1Q5VYJ5 2156 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 KALRNO60229 2985 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 IGHV1-69-2A0A0G2JMI3 117 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 IGHV3-64DA0A0J9YX35 117 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 NKX2-6A6NCS4 301 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 MPTX1A8MV57 137 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms