RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 EDDM3AQ14507 147 aa15.04■□□□□ -0
VIM-209ENST00000544301 TIMM23BQ5SRD1 257 aa15.04■□□□□ -0
VIM-209ENST00000544301 TCTEX1D1Q8N7M0 179 aa15.04■□□□□ -0
VIM-209ENST00000544301 ISOC2Q96AB3 205 aa15.04■□□□□ -0
VIM-209ENST00000544301 OR4C12Q96R67 309 aa15.04■□□□□ -0
VIM-209ENST00000544301 PARD6GQ9BYG4 376 aaPredicted RBP15.04■□□□□ -0
VIM-209ENST00000544301 VSIRQ9H7M9 311 aa15.04■□□□□ -0
VIM-209ENST00000544301 UNKLQ9H9P5 680 aaKnown RBP15.04■□□□□ -0
VIM-209ENST00000544301 MT-ND4LP03901 98 aa15.03■□□□□ -0
VIM-209ENST00000544301 SLC38A11Q08AI6 406 aa15.03■□□□□ -0
VIM-209ENST00000544301 RTP5Q14D33 572 aa15.03■□□□□ -0
VIM-209ENST00000544301 TRAT1Q6PIZ9 186 aa15.03■□□□□ -0
VIM-209ENST00000544301 ZNF66Q6ZN08 573 aa15.03■□□□□ -0
VIM-209ENST00000544301 C2CD4CQ8TF44 421 aa15.03■□□□□ -0
VIM-209ENST00000544301 AGMATQ9BSE5 352 aa15.03■□□□□ -0
VIM-209ENST00000544301 WDR61Q9GZS3 305 aaKnown RBP15.03■□□□□ -0
VIM-209ENST00000544301 BIN3Q9NQY0 253 aa15.03■□□□□ -0
VIM-209ENST00000544301 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.03■□□□□ -0
VIM-209ENST00000544301 WASF3Q9UPY6 502 aa15.03■□□□□ -0
VIM-209ENST00000544301 PSG11Q9UQ72 335 aa15.03■□□□□ -0
VIM-209ENST00000544301 A0A1W2PPH5 198 aa15.02■□□□□ -0
VIM-209ENST00000544301 LINC00473A8K010 186 aa15.02■□□□□ -0
VIM-209ENST00000544301 ST8SIA5O15466 376 aa15.02■□□□□ -0
VIM-209ENST00000544301 CLDN14O95500 239 aa15.02■□□□□ -0
VIM-209ENST00000544301 IGHV3-13P01766 116 aa15.02■□□□□ -0
VIM-209ENST00000544301 ADH4P08319 380 aa15.02■□□□□ -0
VIM-209ENST00000544301 FBP1P09467 338 aa15.02■□□□□ -0
VIM-209ENST00000544301 HABP2Q14520 560 aaPredicted RBP15.02■□□□□ -0
VIM-209ENST00000544301 Q3ZCU0 254 aa15.02■□□□□ -0
VIM-209ENST00000544301 USF3Q68DE3 2245 aa15.02■□□□□ -0
VIM-209ENST00000544301 RAB29O14966 203 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 CFHR2P36980 270 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 LINC00205P59089 165 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 TCF15Q12870 199 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 ZNF726P1Q15940 193 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 RNF212Q495C1 297 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 SPRNQ5BIV9 151 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 C1orf185Q5T7R7 199 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 OR8G2PQ6IF36 304 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 FAM90A1Q86YD7 464 aa15.02□□□□□ -0.01
VIM-209ENST00000544301 HSD17B10Q99714 261 aaKnown RBP15.02□□□□□ -0.01
VIM-209ENST00000544301 LAMA5O15230 3695 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 DIDO1Q9BTC0 2240 aaKnown RBP15.01□□□□□ -0.01
VIM-209ENST00000544301 H3BQ15 152 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 ARG1P05089 322 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 PTAFRP25105 342 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 CEBPGP53567 150 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 SERF2P84101 59 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 KHDC3LQ587J8 217 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 LINC00518Q8N0U6 118 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 GCSAMQ8N6F7 178 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 CYB561D1Q8N8Q1 229 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 MBD3L1Q8WWY6 194 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 CLN8Q9UBY8 286 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 IGHV3OR15-7A0A075B7D8 119 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 LOC102723971A0A1B0GUV8 181 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 A0A1W2PPE2 198 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 LTC4SQ16873 150 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 EIF2S3LQ2VIR3 472 aaKnown RBP15.01□□□□□ -0.01
VIM-209ENST00000544301 TAF15Q92804 592 aaKnown RBP eCLIP15.01□□□□□ -0.01
VIM-209ENST00000544301 MEGF10Q96KG7 1140 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 SNX22Q96L94 193 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 OR2V2Q96R30 315 aa15.01□□□□□ -0.01
VIM-209ENST00000544301 SEBOXQ9HB31 216 aaPredicted RBP15.01□□□□□ -0.01
VIM-209ENST00000544301 UBE2L5PA0A1B0GUS4 154 aa15□□□□□ -0.01
VIM-209ENST00000544301 K7EM74 188 aa15□□□□□ -0.01
VIM-209ENST00000544301 TM4SF5O14894 197 aa15□□□□□ -0.01
VIM-209ENST00000544301 CRYAAP02489 173 aa15□□□□□ -0.01
VIM-209ENST00000544301 GZMHP20718 246 aa15□□□□□ -0.01
VIM-209ENST00000544301 GLRXP35754 106 aa15□□□□□ -0.01
VIM-209ENST00000544301 HOXA1P49639 335 aaPredicted RBP15□□□□□ -0.01
VIM-209ENST00000544301 KLF3P57682 345 aaPredicted RBP15□□□□□ -0.01
VIM-209ENST00000544301 RAB5BP61020 215 aa15□□□□□ -0.01
VIM-209ENST00000544301 NKX6-1P78426 367 aaPredicted RBP15□□□□□ -0.01
VIM-209ENST00000544301 C3orf36Q3SXR2 165 aa15□□□□□ -0.01
VIM-209ENST00000544301 SSX7Q7RTT5 188 aa15□□□□□ -0.01
VIM-209ENST00000544301 H2BFWTQ7Z2G1 175 aa15□□□□□ -0.01
VIM-209ENST00000544301 RBMXL3Q8N7X1 1067 aaKnown RBP15□□□□□ -0.01
VIM-209ENST00000544301 GNG13Q9P2W3 67 aa15□□□□□ -0.01
VIM-209ENST00000544301 NBEAQ8NFP9 2946 aa15□□□□□ -0.01
VIM-209ENST00000544301 C1orf196B1AJZ1 125 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 MGST3O14880 152 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 TIMP3P35625 211 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 ZNF787Q6DD87 383 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 LCN15Q6UWW0 184 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 ZNF429Q86V71 674 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 MOGAT3Q86VF5 341 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 MUCL1Q96DR8 90 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 RCC1LQ96I51 464 aaKnown RBP14.99□□□□□ -0.01
VIM-209ENST00000544301 LAMP3Q9UQV4 416 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 CD55P08174 381 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 RPS23P62266 143 aaKnown RBP14.99□□□□□ -0.01
VIM-209ENST00000544301 CR1LQ2VPA4 569 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 TMEM41BQ5BJD5 291 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 VHLLQ6RSH7 139 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 FAM24BQ8N5W8 94 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 DTD1Q8TEA8 209 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 EDARADDQ8WWZ3 215 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 RAB39BQ96DA2 213 aa14.99□□□□□ -0.01
VIM-209ENST00000544301 SPRY3O43610 288 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms