RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 FAM103A1Q9BTL3 118 aaKnown RBP11.84□□□□□ -0.51
RTN3-211ENST00000542238 RANGRFQ9HD47 186 aaPredicted RBP11.84□□□□□ -0.51
RTN3-211ENST00000542238 ZNF355PQ9NSJ1 428 aa11.84□□□□□ -0.51
RTN3-211ENST00000542238 GHRLQ9UBU3 117 aa11.84□□□□□ -0.51
RTN3-211ENST00000542238 SLC23A1Q9UHI7 598 aa11.84□□□□□ -0.51
RTN3-211ENST00000542238 WASHC3Q9Y3C0 194 aa11.84□□□□□ -0.51
RTN3-211ENST00000542238 C13orf42A0A1B0GVH6 325 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 SMIM18P0DKX4 95 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 C6orf141Q5SZD1 244 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 GLDNQ6ZMI3 551 aaPredicted RBP11.83□□□□□ -0.52
RTN3-211ENST00000542238 DHRSXQ8N5I4 330 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 TMEM80Q96HE8 168 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 PGLYRP3Q96LB9 341 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 METTL1Q9UBP6 276 aaKnown RBP11.83□□□□□ -0.52
RTN3-211ENST00000542238 CLEC2DQ9UHP7 191 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 GAB2Q9UQC2 676 aa11.83□□□□□ -0.52
RTN3-211ENST00000542238 H0Y980 276 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 H0YJW9 148 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 SLC22A1O15245 554 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 TAS2R43P59537 309 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 THRSPQ92748 146 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 CYYR1Q96J86 154 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 DERL3Q96Q80 235 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 SULT4A1Q9BR01 284 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 FAAP24Q9BTP7 215 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 MRPS26Q9BYN8 205 aaKnown RBP11.82□□□□□ -0.52
RTN3-211ENST00000542238 TUBA4BQ9H853 241 aa11.82□□□□□ -0.52
RTN3-211ENST00000542238 CHMP1AQ9HD42 196 aaPredicted RBP11.82□□□□□ -0.52
RTN3-211ENST00000542238 A0A0G2JLM5 398 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 PNMA8CA0A1B0GUJ8 204 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 JTBO76095 146 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 CA2P00918 260 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 UBBP0CG47 229 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 CPEP16870 476 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 MAPK3P27361 379 aaPredicted RBP11.81□□□□□ -0.52
RTN3-211ENST00000542238 PSG5Q15238 335 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 HAGHQ16775 308 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 MOGAT2Q3SYC2 334 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 GTSCR1Q86UQ5 136 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 SETD9Q8NE22 299 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 OR5AN1Q8NGI8 311 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 SETD6Q8TBK2 473 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 ABHD14BQ96IU4 210 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 TSNAXQ99598 290 aaKnown RBP11.81□□□□□ -0.52
RTN3-211ENST00000542238 BIRC6Q9NR09 4857 aa11.81□□□□□ -0.52
RTN3-211ENST00000542238 H3BUA1 57 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 ITGB1BP1O14713 200 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 SPDEFO95238 335 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 RPL5P46777 297 aaKnown RBP11.8□□□□□ -0.52
RTN3-211ENST00000542238 FXYD3Q14802 87 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 MOB1BQ7L9L4 216 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 C6orf201Q7Z4U5 140 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 SVOPQ8N4V2 548 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 POC5Q8NA72 575 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 GRPEL2Q8TAA5 225 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 IL17DQ8TAD2 202 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 FBLIM1Q8WUP2 373 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 EDARADDQ8WWZ3 215 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 TMED9Q9BVK6 235 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 PTTG2Q9NZH5 202 aa11.8□□□□□ -0.52
RTN3-211ENST00000542238 SACSQ9NZJ4 4579 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 ANKRD34BA5PLL1 514 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 TNFAIP8O95379 198 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 CNIH1O95406 144 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 RPS16P62249 146 aaKnown RBP11.79□□□□□ -0.52
RTN3-211ENST00000542238 KLF5Q13887 457 aaPredicted RBP11.79□□□□□ -0.52
RTN3-211ENST00000542238 TATDN3Q17R31 274 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 ZNF485Q8NCK3 441 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 OR9G4Q8NGQ1 327 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 AGMATQ9BSE5 352 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 TMEM59Q9BXS4 323 aa11.79□□□□□ -0.52
RTN3-211ENST00000542238 RIMS4Q9H426 269 aaPredicted RBP11.79□□□□□ -0.52
RTN3-211ENST00000542238 STARD9Q9P2P6 4700 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 NAPSAO96009 420 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 CD1AP06126 327 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 CELP19835 753 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 ZBTB25P24278 435 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 CEACAM6P40199 344 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 RPS27AP62979 156 aaKnown RBP11.78□□□□□ -0.52
RTN3-211ENST00000542238 ST3GAL4Q11206 333 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 OR10K2Q6IF99 312 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 LCN12Q6JVE5 192 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 ZNF880Q6PDB4 577 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 DRAXINQ8NBI3 349 aaPredicted RBP11.78□□□□□ -0.52
RTN3-211ENST00000542238 OR5T1Q8NG75 326 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 KCNG3Q8TAE7 436 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 DGCR14Q96DF8 476 aaKnown RBP11.78□□□□□ -0.52
RTN3-211ENST00000542238 PARP12Q9H0J9 701 aaKnown RBP11.78□□□□□ -0.52
RTN3-211ENST00000542238 C11orf54Q9H0W9 315 aaPredicted RBP11.78□□□□□ -0.52
RTN3-211ENST00000542238 PLEKHJ1Q9NW61 149 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 ZNF221Q9UK13 617 aa11.78□□□□□ -0.52
RTN3-211ENST00000542238 EFCAB10A6NFE3 127 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 SLC25A17O43808 307 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 APOA2P02652 100 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 IGKV1-16P04430 117 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 AADACP22760 399 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 HTR2CP28335 458 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 SYNJ2BPP57105 145 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 GLT8D1Q68CQ7 371 aa11.77□□□□□ -0.53
RTN3-211ENST00000542238 PDPNQ86YL7 162 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms