RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 MRPS7Q9Y2R9 242 aaKnown RBP6.95□□□□□ -1.3
CLSTN3-212ENST00000541770 HILPDAQ9Y5L2 63 aa6.95□□□□□ -1.3
CLSTN3-212ENST00000541770 NOTCH3Q9UM47 2321 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 A0A1W2PPE3 182 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 SLC31A2O15432 143 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 CEACAM6P40199 344 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 RAB13P51153 203 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 ARHGDIBP52566 201 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 KRTAP10-11P60412 298 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 MRPS10P82664 201 aaKnown RBP6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 ZNF816Q0VGE8 651 aaPredicted RBP6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 PYHIN1Q6K0P9 492 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 FAM71F2Q6NXP2 309 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 LIAT1Q6ZQX7 453 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 TMEM219Q86XT9 240 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 SNX29P2Q8IUI4 249 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 OR8H3Q8N146 312 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 GVQW1Q8N7I0 195 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 OR2AK2Q8NG84 335 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 OR10J5Q8NHC4 309 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 SNAPC3Q92966 411 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 TOMM40LQ969M1 308 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 RPEQ96AT9 228 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 DIRAS2Q96HU8 199 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 SOSTQ9BQB4 213 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 AGMATQ9BSE5 352 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 IFT46Q9NQC8 304 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 ABCB10Q9NRK6 738 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 RDH8Q9NYR8 311 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 PIPOXQ9P0Z9 390 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 OR1A1Q9P1Q5 309 aa6.94□□□□□ -1.3
CLSTN3-212ENST00000541770 HSD17B6O14756 317 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 RAB29O14966 203 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 BET1O15155 118 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 CTDSPLO15194 276 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 TXNL1O43396 289 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 LANCL1O43813 399 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 GAPDHP04406 335 aaKnown RBP6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 BRS3P32247 399 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 TNFSF8P32971 234 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 S100A5P33763 92 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 VDAC2P45880 294 aaPredicted RBP6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 ARPC4P59998 168 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 TMEM95Q3KNT9 176 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 KHDC1LQ5JSQ8 128 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 ODF3L1Q8IXM7 274 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 H1FOOQ8IZA3 346 aaPredicted RBP6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 OR5AP2Q8NGF4 316 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 PIFOQ8TCI5 191 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 RTN4IP1Q8WWV3 396 aaPredicted RBP6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 DPF1Q92782 380 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 ABHD1Q96SE0 405 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 B9D2Q9BPU9 175 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 GINS4Q9BRT9 223 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 KRTAP17-1Q9BYP8 105 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 PRSS22Q9GZN4 317 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 C11orf54Q9H0W9 315 aaPredicted RBP6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 IFI27L2Q9H2X8 130 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 GAB2Q9UQC2 676 aa6.93□□□□□ -1.3
CLSTN3-212ENST00000541770 SAA2-SAA4A0A096LPE2 208 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 A0A1W2PPI3 338 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 MEIS3P1A6NDR6 274 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 FAM90A9PA6NNJ1 464 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 GABARAPH6UMI1 98 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 ST8SIA5O15466 376 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 TUSC2O75896 110 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 SAA2P0DJI9 122 aaPredicted RBP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 PTBP1P26599 531 aaKnown RBP eCLIP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 RCVRNP35243 200 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 TAS2R46P59540 309 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 ACTBP60709 375 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 SSBP1Q04837 148 aaKnown RBP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 IL18Q14116 193 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 DIAPH2-AS1Q14236 149 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 CDK10Q15131 360 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 Q6ZS46 218 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 ZNF833PQ6ZTB9 187 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 OVCH2Q7RTZ1 564 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 CCDC190Q86UF4 302 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 THNSL2Q86YJ6 484 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 WFDC9Q8NEX5 89 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 OR5AU1Q8NGC0 362 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 RCC1LQ96I51 464 aaKnown RBP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 TSC22D3Q99576 134 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 PARP12Q9H0J9 701 aaKnown RBP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 MTFP1Q9UDX5 166 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 ZNF107Q9UII5 783 aaPredicted RBP6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 PITPNC1Q9UKF7 332 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 TCF19Q9Y242 345 aa6.92□□□□□ -1.3
CLSTN3-212ENST00000541770 IGHV1-3A0A0C4DH29 117 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 TCRBV4S1A1TA0A5B7 111 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 A6NDX4 124 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 FABP12A6NFH5 140 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 GSTZ1O43708 216 aaPredicted RBP6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 RBBP9O75884 186 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 SLC22A5O76082 557 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 DUS4LO95620 317 aaKnown RBP6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 OR5H8P0DN80 308 aa6.91□□□□□ -1.3
CLSTN3-212ENST00000541770 CD1BP29016 333 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms