RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 HAND1O96004 215 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 IFNA21P01568 189 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 ARG1P05089 322 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 NBEAP1P0C6P0 100 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 IRF2P14316 349 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 GLRXP35754 106 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 F2RL1P55085 397 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 SELENOVP59797 346 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 CD81P60033 236 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 TMEM187Q14656 261 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 WDR82Q6UXN9 313 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF497Q6ZNH5 498 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF826PQ6ZT77 177 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 OR11L1Q8NGX0 322 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 DCUN1D4Q92564 292 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 DIDO1Q9BTC0 2240 aaKnown RBP8.13□□□□□ -1.11
CLIP1-212ENST00000540304 KANTRA0A1W2PQU2 76 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 C1QTNF9BB2RNN3 333 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 BCL2L11O43521 198 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 IGHV3-13P01766 116 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 PET100P0DJ07 73 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 MC5RP33032 325 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 NDUFA6P56556 154 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 NKX6-1P78426 367 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-212ENST00000540304 IL15RAQ13261 267 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 OR5I1Q13606 314 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 MSMPQ1L6U9 139 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 SP6Q3SY56 376 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 PRR30Q53SZ7 412 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-212ENST00000540304 KHDC3LQ587J8 217 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 PCSK4Q6UW60 755 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 GAPTQ8N292 157 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 LRTM2Q8N967 370 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 OR1S2Q8NGQ3 325 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 PLPPR1Q8TBJ4 325 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 ISOC2Q96AB3 205 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 CABLES2Q9BTV7 478 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 CHODLQ9H9P2 273 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 ELOVL5Q9NYP7 299 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 DUSP13Q9UII6 198 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 CHD3Q12873 2000 aaKnown RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 LYL1P12980 280 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 RAB5AP20339 215 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 GNRHRP30968 328 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 IL2RGP31785 369 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 CCKARP32238 428 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 KLF3P57682 345 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 RND3P61587 244 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 RPS23P62266 143 aaKnown RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 IAH1Q2TAA2 248 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 GGNBP1Q5YKI7 109 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 PRSS54Q6PEW0 395 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 ACP7Q6ZNF0 438 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 LIAT1Q6ZQX7 453 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 OR2Z1Q8NG97 314 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 CD300LFQ8TDQ1 290 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 SECTM1Q8WVN6 248 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 MRPL24Q96A35 216 aaKnown RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF479Q96JC4 524 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 GPHA2Q96T91 129 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 RNF126Q9BV68 326 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 SLC5A7Q9GZV3 580 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 TMEM231Q9H6L2 316 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 TAAR3PQ9P1P4 343 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 TRAPPC2LQ9UL33 140 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 NPIPB11E5RHQ5 1161 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 H0YIZ8 118 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 WNT9BO14905 357 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 MPPED1O15442 326 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 CCL25O15444 150 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 PHF1O43189 567 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 LMO1P25800 156 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 UBA52P62987 128 aaKnown RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 RBPJQ06330 500 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 KIAA0141Q14154 515 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 ATP6V1FQ16864 119 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 GFI1BQ5VTD9 330 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 LRP11Q86VZ4 500 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 LGI3Q8N145 548 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 LYG1Q8N1E2 194 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 OR5R1Q8NH85 324 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 MSI2Q96DH6 328 aaKnown RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF48Q96MX3 618 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 ALKBH7Q9BT30 221 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-212ENST00000540304 RAXQ9Y2V3 346 aa8.12□□□□□ -1.11
CLIP1-212ENST00000540304 TRAV39A0A0B4J263 110 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 IGKV1D-13A0A0B4J2D9 117 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 C3orf85A0A1B0GTC6 90 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 A0A1W2PPH5 198 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 C16orf97H3BN30 126 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 TFF1P04155 84 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 IGKV1-13P0DP09 117 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 CEBPDP49716 269 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-212ENST00000540304 SRPXP78539 464 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 SCGB2A2Q13296 93 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 RAB32Q13637 225 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 SMIM21Q3B7S5 101 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF818PQ6ZRF7 136 aa8.11□□□□□ -1.11
CLIP1-212ENST00000540304 H1FOOQ8IZA3 346 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-212ENST00000540304 UBALD1Q8TB05 177 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms