RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 PPP1R27Q86WC6 154 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 DRAXINQ8NBI3 349 aaPredicted RBP6.52□□□□□ -1.37
USP28-203ENST00000537490 ABHD5Q8WTS1 349 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 ARPC1AQ92747 370 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 RHOVQ96L33 236 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 MS4A10Q96PG2 267 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 GFI1Q99684 422 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 AK3Q9UIJ7 227 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 RNF150Q9ULK6 438 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 LSM2Q9Y333 95 aaKnown RBP6.52□□□□□ -1.37
USP28-203ENST00000537490 WASHC3Q9Y3C0 194 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 SORL1Q92673 2214 aa6.52□□□□□ -1.37
USP28-203ENST00000537490 TRIM64CA6NLI5 447 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 FOXI3A8MTJ6 420 aaPredicted RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 PTGES3LE9PB15 166 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 CASQ2O14958 399 aaPredicted RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 RBBP9O75884 186 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 BPNT1O95861 308 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 HSPB1P04792 205 aaKnown RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 UCHL1P09936 223 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 GP9P14770 177 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 HLA-DRB3P79483 266 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 TMEM267Q0VDI3 215 aaPredicted RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 P2RY14Q15391 338 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 SPHARQ15513 63 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 AKIRIN2Q53H80 203 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 ACTBL2Q562R1 376 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 ZNF562Q6V9R5 426 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 TMEM91Q6ZNR0 172 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 FAM89BQ8N5H3 189 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 TCTEX1D1Q8N7M0 179 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 ZNF383Q8NA42 475 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 LFNGQ8NES3 379 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 OR6M1Q8NGM8 313 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 TMEM203Q969S6 136 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 RCHY1Q96PM5 261 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 RNF5Q99942 180 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 MND1Q9BWT6 205 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 RIMS4Q9H426 269 aaPredicted RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 Q9N2K0 584 aa6.51□□□□□ -1.37
USP28-203ENST00000537490 METTL1Q9UBP6 276 aaKnown RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 AK6Q9Y3D8 172 aaKnown RBP6.51□□□□□ -1.37
USP28-203ENST00000537490 IGKV1-6A0A0C4DH72 117 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 ARPC1BO15143 372 aaKnown RBP6.5□□□□□ -1.37
USP28-203ENST00000537490 HSPA12AO43301 675 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 CA2P00918 260 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 IGKV1-16P04430 117 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 FRMD6-AS1P0C7T7 363 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 CPEP16870 476 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 ZBTB25P24278 435 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 VEGFCP49767 419 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 TPPP2P59282 170 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 RPS16P62249 146 aaKnown RBP6.5□□□□□ -1.37
USP28-203ENST00000537490 IRF3Q14653 427 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 MED22Q15528 200 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 LIPKQ5VXJ0 399 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 MOB1BQ7L9L4 216 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 HAPLN4Q86UW8 402 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 OR6Q1Q8NGQ2 317 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 MUC7Q8TAX7 377 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 EDARADDQ8WWZ3 215 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 PTX4Q96A99 478 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 FLYWCH2Q96CP2 140 aaKnown RBP6.5□□□□□ -1.37
USP28-203ENST00000537490 ARHGAP5-AS1Q96IT6 56 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 URM1Q9BTM9 101 aaKnown RBP6.5□□□□□ -1.37
USP28-203ENST00000537490 GHITMQ9H3K2 345 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 RYR3Q15413 4870 aa6.5□□□□□ -1.37
USP28-203ENST00000537490 SLC17A2O00624 439 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 TRGV3P03979 118 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 TFAP2AP05549 437 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 OR8U9P0C7N5 309 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 ARSBP15848 533 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 CLDN12P56749 244 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 RPS25P62851 125 aaKnown RBP6.49□□□□□ -1.37
USP28-203ENST00000537490 SSBP2P81877 361 aaPredicted RBP6.49□□□□□ -1.37
USP28-203ENST00000537490 PITPNAQ00169 270 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 PLA2G7Q13093 441 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 FXYD3Q14802 87 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 SRSF7Q16629 238 aaKnown RBP eCLIP6.49□□□□□ -1.37
USP28-203ENST00000537490 PLAC9Q5JTB6 97 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 CASC10Q5T4H9 136 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 PYHIN1Q6K0P9 492 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 Q8N1Y9 231 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 OR5T1Q8NG75 326 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 UFD1Q92890 307 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 OR4C12Q96R67 309 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 TSNAXQ99598 290 aaKnown RBP6.49□□□□□ -1.37
USP28-203ENST00000537490 CMSS1Q9BQ75 279 aaKnown RBP6.49□□□□□ -1.37
USP28-203ENST00000537490 PECRQ9BY49 303 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 PLGRKTQ9HBL7 147 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 RDH8Q9NYR8 311 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 ZNF221Q9UK13 617 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 HSF4Q9ULV5 492 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 MGAT4AQ9UM21 535 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 STAB2Q8WWQ8 2551 aa6.49□□□□□ -1.37
USP28-203ENST00000537490 TRDCB7Z8K6 153 aa6.48□□□□□ -1.37
USP28-203ENST00000537490 M0R1X1 148 aa6.48□□□□□ -1.37
USP28-203ENST00000537490 LDLRAD4O15165 306 aa6.48□□□□□ -1.37
USP28-203ENST00000537490 SLC25A17O43808 307 aa6.48□□□□□ -1.37
USP28-203ENST00000537490 SPDEFO95238 335 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms