RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZNF816-ZNF321PA0A0X1KG74 233 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ZNF840PA6NDX5 716 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 NPIPB13A6NJU9 1138 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 NPIPB4C9JG80 1138 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 H0YJW9 148 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 PRYO14603 147 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 NBR2O15453 112 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ZG16O60844 167 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 PROP1O75360 226 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ZNF217O75362 1048 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 HSBP1O75506 76 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 KBTBD11O94819 623 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 SOX14O95416 240 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 SLC2A10O95528 541 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 SCTP09683 121 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ARSAP15289 507 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 RGRP47804 291 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 STC1P52823 247 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 SLC25A1P53007 311 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 GGTLC2Q14390 218 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 HLA-DRB5Q30154 266 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 TCEAL5Q5H9L2 206 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 TEX36Q5VZQ5 186 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 OTPQ5XKR4 325 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 KCNIP4Q6PIL6 250 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ARL9Q6T311 187 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ZNF621Q6ZSS3 439 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 SLC25A42Q86VD7 318 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 TMEM219Q86XT9 240 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 TMEM229BQ8NBD8 167 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 OR2T33Q8NG76 320 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 OR5AR1Q8NGP9 310 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 VSTM2AQ8TAG5 236 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 ZNF502Q8TBZ5 544 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 OVCA2Q8WZ82 227 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 TMEM54Q969K7 222 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 SDF2Q99470 211 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 KRTAP4-5Q9BYR2 181 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 MS4A6AQ9H2W1 248 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 FNDC4Q9H6D8 234 aaPredicted RBP4.63□□□□□ -1.67
CD44-236ENST00000533222 PRTFDC1Q9NRG1 225 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 POLDIP2Q9Y2S7 368 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 MED31Q9Y3C7 131 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 V9GYY9 64 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 TDRD15B5MCY1 1934 aaKnown RBP4.63□□□□□ -1.67
CD44-236ENST00000533222 SBF2Q86WG5 1849 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 NYNRINQ9P2P1 1898 aaKnown RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 SCN8AQ9UQD0 1980 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 ARHGEF17Q96PE2 2063 aaPredicted RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 C5orf49A4QMS7 147 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 ANTXRLA6NF34 631 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 MSGN1A6NI15 193 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 CEACAM18A8MTB9 384 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 IFNL4K9M1U5 179 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 RHODO00212 210 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 RRHO14718 337 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 ST8SIA3O43173 380 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 WISP3O95389 354 aaPredicted RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 HRASP01112 189 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 HLA-DQA2P01906 255 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 GYPAP02724 150 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 LIMS3P0CW19 117 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 LIMS4P0CW20 117 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PVRP15151 417 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PGCP20142 388 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 CDK2P24941 298 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PSMB4P28070 264 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 GRPRP30550 384 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 EFNB2P52799 333 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 TMPRSS3P57727 454 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PAFAH1B3Q15102 231 aaKnown RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 C2orf68Q2NKX9 166 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 MIDNQ504T8 468 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OR10J3Q5JRS4 329 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 TMEM215Q68D42 235 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 ZNF322Q6U7Q0 402 aaPredicted RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 GLIPR1L1Q6UWM5 242 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 STAC2Q6ZMT1 411 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 CMC1Q7Z7K0 106 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OSR2Q8N2R0 312 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 KIR3DL3Q8N743 410 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 ZNF709Q8N972 641 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 Q8N976 141 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OR2M3Q8NG83 312 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OR10V1Q8NGI7 309 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OR4C16Q8NGL9 310 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OR10S1Q8NGN2 331 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 MAL2Q969L2 176 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 LINC00615Q96LM1 132 aaPredicted RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 SGK494Q96LW2 274 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 TSSK2Q96PF2 358 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 OR4C12Q96R67 309 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PECRQ9BY49 303 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PPDPFQ9H3Y8 114 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 PRORYQ9H606 182 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 SDF2L1Q9HCN8 221 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 AMBNQ9NP70 447 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 BEX4Q9NWD9 120 aaPredicted RBP4.62□□□□□ -1.67
CD44-236ENST00000533222 OR1A1Q9P1Q5 309 aa4.62□□□□□ -1.67
CD44-236ENST00000533222 ABT1Q9ULW3 272 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms