RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ELK1P19419 428 aa15.74■□□□□ 0.11
CPSF1-209ENST00000532725 LINC00205P59089 165 aa15.74■□□□□ 0.11
CPSF1-209ENST00000532725 MZT2AQ6P582 158 aa15.74■□□□□ 0.11
CPSF1-209ENST00000532725 GLDNQ6ZMI3 551 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-209ENST00000532725 DRAXINQ8NBI3 349 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-209ENST00000532725 BEST4Q8NFU0 473 aa15.74■□□□□ 0.11
CPSF1-209ENST00000532725 BCL7BQ9BQE9 202 aa15.74■□□□□ 0.11
CPSF1-209ENST00000532725 PKD1L1Q8TDX9 2849 aa15.74■□□□□ 0.11
CPSF1-209ENST00000532725 MC5RP33032 325 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 CBX5P45973 191 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 ACTBP60709 375 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 FAM71E2Q8N5Q1 922 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 AP3S1Q92572 193 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 OR2D2Q9H210 308 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 LIN7CQ9NUP9 197 aaKnown RBP15.73■□□□□ 0.11
CPSF1-209ENST00000532725 SDHAF2Q9NX18 166 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 SCOCQ9UIL1 159 aa15.73■□□□□ 0.11
CPSF1-209ENST00000532725 SMIM31A0A1B0GVY4 71 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 OR5H14A6NHG9 310 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 LINC01548A6NM66 108 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 PEX14O75381 377 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 IGHG2P01859 326 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 NFYAP23511 347 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-209ENST00000532725 PRR31Q5SQ13 230 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 HIST2H2BDQ6DRA6 164 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 FAM131AQ6UXB0 335 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 C11orf44Q8N8P7 122 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 ZNF383Q8NA42 475 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 NPBQ8NG41 125 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 C5orf30Q96GV9 206 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 OR2W1Q9Y3N9 320 aa15.72■□□□□ 0.11
CPSF1-209ENST00000532725 WNK1Q9H4A3 2382 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 MEIS3P1A6NDR6 274 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 M0R1X1 148 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 TUSC2O75896 110 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 CD28P10747 220 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 CNTFRP26992 372 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 PRSS3P35030 304 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 CENPVQ7Z7K6 275 aaPredicted RBP15.71■□□□□ 0.11
CPSF1-209ENST00000532725 OR5AU1Q8NGC0 362 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 SNAPC3Q92966 411 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 RASL11BQ9BPW5 248 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 ANAPC10Q9UM13 185 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 MRPS7Q9Y2R9 242 aaKnown RBP15.71■□□□□ 0.11
CPSF1-209ENST00000532725 WASHC3Q9Y3C0 194 aa15.71■□□□□ 0.11
CPSF1-209ENST00000532725 RBM7Q9Y580 266 aaKnown RBP15.71■□□□□ 0.11
CPSF1-209ENST00000532725 MGAM2Q2M2H8 2515 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 FCER2P06734 321 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 MMDQ15546 238 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 DYNC2LI1Q8TCX1 351 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 RNF5Q99942 180 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 CEPT1Q9Y6K0 416 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 VWFP04275 2813 aa15.7■□□□□ 0.1
CPSF1-209ENST00000532725 FBN3Q75N90 2809 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 J3QRK9 145 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 FBXO24O75426 580 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 RBBP9O75884 186 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 NAT1P18440 290 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 SOX6P35712 828 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 LUMP51884 338 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-209ENST00000532725 ARPC4P59998 168 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 SLC35E3Q7Z769 313 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 OR5AP2Q8NGF4 316 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 GPX8Q8TED1 209 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 ISOC1Q96CN7 298 aa15.69■□□□□ 0.1
CPSF1-209ENST00000532725 NOL4LQ96MY1 436 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-209ENST00000532725 IGKV1D-13A0A0B4J2D9 117 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 H3BMQ9 156 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 H7C2Y5 167 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 NBR2O15453 112 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 NDUFA3O95167 84 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 IGLV2-14P01704 120 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 IGKV1-16P04430 117 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 IGKV1-13P0DP09 117 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 CD83Q01151 205 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 TCTEX1D4Q5JR98 221 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 C10orf99Q6UWK7 81 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 LYSMD2Q8IV50 215 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 MIXL1Q9H2W2 232 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 NECAP2Q9NVZ3 263 aa15.68■□□□□ 0.1
CPSF1-209ENST00000532725 FAM25AB3EWG3 89 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 FAM25CB3EWG5 89 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 FAM25GB3EWG6 89 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 M0QZ24 198 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 CTDSP2O14595 271 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 OR5H8P0DN80 308 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 FCGR2CP31995 323 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 DUTP33316 252 aaKnown RBP15.67■□□□□ 0.1
CPSF1-209ENST00000532725 C5orf64Q2M2E5 130 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 PDPNQ86YL7 162 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 ZNF645Q8N7E2 425 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 GIMAP1Q8WWP7 306 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 CITED2Q99967 270 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-209ENST00000532725 HSPB9Q9BQS6 159 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 SCPEP1Q9HB40 452 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 IFT46Q9NQC8 304 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 LINC00527Q9UJ94 153 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 ADAM30Q9UKF2 790 aa15.67■□□□□ 0.1
CPSF1-209ENST00000532725 NBEAL1Q6ZS30 2694 aa15.66■□□□□ 0.1
CPSF1-209ENST00000532725 SLC22A5O76082 557 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms