RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 BRS3P32247 399 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 MAGEA5P43359 124 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 LRRC75BQ2VPJ9 315 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 FAM78BQ5VT40 261 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 DTD1Q8TEA8 209 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 AGMATQ9BSE5 352 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 C12orf49Q9H741 205 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 CRIM1Q9NZV1 1036 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 GGCTO75223 188 aaKnown RBP12.03□□□□□ -0.48
USP48-213ENST00000529637 GYPAP02724 150 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 TMEM41BQ5BJD5 291 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.03□□□□□ -0.48
USP48-213ENST00000529637 MKXQ8IYA7 352 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 IL1F10Q8WWZ1 152 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 STRADBQ9C0K7 418 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 CACNG5Q9UF02 275 aa12.03□□□□□ -0.48
USP48-213ENST00000529637 RP1L1Q8IWN7 2480 aaPredicted RBP12.03□□□□□ -0.48
USP48-213ENST00000529637 NBEAQ8NFP9 2946 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 UBE2L5PA0A1B0GUS4 154 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 NPPCP23582 126 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 OR10J1P30954 320 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 TNFSF10P50591 281 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 ACOT6Q3I5F7 207 aaPredicted RBP12.02□□□□□ -0.48
USP48-213ENST00000529637 OR10V1Q8NGI7 309 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 PSENENQ9NZ42 101 aa12.02□□□□□ -0.48
USP48-213ENST00000529637 TMEM265A0A087WTH1 108 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 IGKV1-39P01597 117 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 IGKV1D-39P04432 117 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 PLP2Q04941 152 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 ACSM6Q6P461 480 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 TOMM20LQ6UXN7 152 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 OR2M7Q8NG81 312 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 OR5D13Q8NGL4 314 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 PAM16Q9Y3D7 125 aa12.02□□□□□ -0.49
USP48-213ENST00000529637 PGPEP1LA6NFU8 196 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 GFRA1P56159 465 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 RPL15P61313 204 aaKnown RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 SPANXN5Q5MJ07 72 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 SPATA46Q5T0L3 261 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 C1QTNF5Q9BXJ0 243 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 WDR61Q9GZS3 305 aaKnown RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 A0A0U1RQK1 487 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 ZNF320A2RRD8 509 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 SYNGR1O43759 233 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 IFNA1P01562 189 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 F2RP25116 425 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 CDKN1AP38936 164 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 RPS16P62249 146 aaKnown RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 OR5I1Q13606 314 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 IGFBP7Q16270 282 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 C20orf204Q6ZNR8 217 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 C1orf210Q8IVY1 113 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 CISD2Q8N5K1 135 aaKnown RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 UBALD1Q8TB05 177 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 PSMF1Q92530 271 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 APH1AQ96BI3 265 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 REPIN1Q9BWE0 567 aaKnown RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 RIMS4Q9H426 269 aaPredicted RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 PARD6AQ9NPB6 346 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 RBM7Q9Y580 266 aaKnown RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 TRAPPC1Q9Y5R8 145 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 H0Y980 276 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 SYNGR2O43760 224 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 GAGE1Q13065 139 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 OR8G2PQ6IF36 304 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 Q6ZWC4 215 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 FAM173AQ9BQD7 235 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 PSMG3Q9BT73 122 aaPredicted RBP12.01□□□□□ -0.49
USP48-213ENST00000529637 MANBALQ9NQG1 85 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 IL36GQ9NZH8 169 aa12.01□□□□□ -0.49
USP48-213ENST00000529637 ZXDAP98168 799 aa12□□□□□ -0.49
USP48-213ENST00000529637 OR1C1Q15619 314 aa12□□□□□ -0.49
USP48-213ENST00000529637 ZCCHC14Q8WYQ9 949 aaKnown RBP12□□□□□ -0.49
USP48-213ENST00000529637 RAB40CQ96S21 281 aa12□□□□□ -0.49
USP48-213ENST00000529637 PRDM14Q9GZV8 571 aa12□□□□□ -0.49
USP48-213ENST00000529637 ZNF552Q9H707 407 aaPredicted RBP12□□□□□ -0.49
USP48-213ENST00000529637 TUSC2O75896 110 aa12□□□□□ -0.49
USP48-213ENST00000529637 SERPINE2P07093 398 aa12□□□□□ -0.49
USP48-213ENST00000529637 SERF2P84101 59 aa12□□□□□ -0.49
USP48-213ENST00000529637 PMP22Q01453 160 aa12□□□□□ -0.49
USP48-213ENST00000529637 RNPS1Q15287 305 aaKnown RBP12□□□□□ -0.49
USP48-213ENST00000529637 TAF15Q92804 592 aaKnown RBP eCLIP12□□□□□ -0.49
USP48-213ENST00000529637 ABI3Q9P2A4 366 aa12□□□□□ -0.49
USP48-213ENST00000529637 EP300Q09472 2414 aaPredicted RBP12□□□□□ -0.49
USP48-213ENST00000529637 TRAV39A0A0B4J263 110 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 TCF21O43680 179 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 YPEL1O60688 119 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 PAGE4O60829 102 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 TYMSP04818 313 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 GNG10P50151 68 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 TECTBQ96PL2 329 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 YPEL2Q96QA6 119 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 DERL1Q9BUN8 251 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 ARRDC1-AS1Q9H2J1 176 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 MTCH1Q9NZJ7 389 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 TP53TG3Q9ULZ0 132 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 DUXBA0A1W2PPF3 345 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 ZNF503-AS2A6NEH8 195 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 NAPSAO96009 420 aa11.99□□□□□ -0.49
USP48-213ENST00000529637 PSMB3P49720 205 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms