RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 HOGA1Q86XE5 327 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 C11orf44Q8N8P7 122 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 AP3S1Q92572 193 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 SNAPC3Q92966 411 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 CITED1Q99966 193 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 BCL7BQ9BQE9 202 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 PLSCR3Q9NRY6 295 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 CEPT1Q9Y6K0 416 aa10.62□□□□□ -0.71
VPS28-210ENST00000529182 FAM25AB3EWG3 89 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 FAM25CB3EWG5 89 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 FAM25GB3EWG6 89 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 M0QZK8 103 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 FGF16O43320 207 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 NOL3O60936 208 aaKnown RBP10.61□□□□□ -0.71
VPS28-210ENST00000529182 CNTFRP26992 372 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 ARPC4P59998 168 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 SNX29P2Q8IUI4 249 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 Q8N9W7 124 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 DYNC2LI1Q8TCX1 351 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 CMTM3Q96MX0 182 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 SDHAF2Q9NX18 166 aa10.61□□□□□ -0.71
VPS28-210ENST00000529182 RBM7Q9Y580 266 aaKnown RBP10.61□□□□□ -0.71
VPS28-210ENST00000529182 SMIM31A0A1B0GVY4 71 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 H0YJW9 148 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 M0R1X1 148 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 CTDSP2O14595 271 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 PEX14O75381 377 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 CTXN2P0C2S0 81 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 SOX6P35712 828 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 ACTBP60709 375 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 ZNF383Q8NA42 475 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 WNT10AQ9GZT5 417 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 MIXL1Q9H2W2 232 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 GHITMQ9H3K2 345 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 IFT46Q9NQC8 304 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 EXTL2Q9UBQ6 330 aa10.6□□□□□ -0.71
VPS28-210ENST00000529182 PKD1L1Q8TDX9 2849 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 IGKV1D-13A0A0B4J2D9 117 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 CCDC160A6NGH7 325 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 LINC01548A6NM66 108 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 H7C2Y5 167 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 IGKV1-13P0DP09 117 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 PRSS3P35030 304 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 CBX5P45973 191 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 MMDQ15546 238 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 RNASE12Q5GAN4 147 aaKnown RBP10.59□□□□□ -0.71
VPS28-210ENST00000529182 LAX1Q8IWV1 398 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.59□□□□□ -0.71
VPS28-210ENST00000529182 OR5AN1Q8NGI8 311 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 CCDC59Q9P031 241 aaKnown RBP10.59□□□□□ -0.71
VPS28-210ENST00000529182 LINC00527Q9UJ94 153 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 ANAPC10Q9UM13 185 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 OR2W1Q9Y3N9 320 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 VWFP04275 2813 aa10.59□□□□□ -0.71
VPS28-210ENST00000529182 CMYA5Q8N3K9 4069 aa10.58□□□□□ -0.71
VPS28-210ENST00000529182 OR5H14A6NHG9 310 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 RGS5O15539 181 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 CD28P10747 220 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 LUMP51884 338 aaPredicted RBP10.58□□□□□ -0.72
VPS28-210ENST00000529182 C10orf99Q6UWK7 81 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 FAM71E2Q8N5Q1 922 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 OR5AP2Q8NGF4 316 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 GPX8Q8TED1 209 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 WIPF2Q8TF74 440 aaPredicted RBP10.58□□□□□ -0.72
VPS28-210ENST00000529182 NOL4LQ96MY1 436 aaPredicted RBP10.58□□□□□ -0.72
VPS28-210ENST00000529182 RASL11BQ9BPW5 248 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 RBM38Q9H0Z9 239 aaKnown RBP10.58□□□□□ -0.72
VPS28-210ENST00000529182 LIN7CQ9NUP9 197 aaKnown RBP10.58□□□□□ -0.72
VPS28-210ENST00000529182 NECAP2Q9NVZ3 263 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 GAB2Q9UQC2 676 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 WASHC3Q9Y3C0 194 aa10.58□□□□□ -0.72
VPS28-210ENST00000529182 MGAM2Q2M2H8 2515 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 NBR2O15453 112 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 TUSC2O75896 110 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 PMP2P02689 132 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 IGKV1-16P04430 117 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 OR5H8P0DN80 308 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 AADACP22760 399 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 FCGR2CP31995 323 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 MC5RP33032 325 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 RFX2P48378 723 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 SLC35E3Q7Z769 313 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 ZNF645Q8N7E2 425 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 OR8H1Q8NGG4 311 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 HSPB9Q9BQS6 159 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 SLIRPQ9GZT3 109 aaKnown RBP10.57□□□□□ -0.72
VPS28-210ENST00000529182 C6orf62Q9GZU0 229 aaPredicted RBP10.57□□□□□ -0.72
VPS28-210ENST00000529182 NBEAL1Q6ZS30 2694 aa10.57□□□□□ -0.72
VPS28-210ENST00000529182 FBN3Q75N90 2809 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 LINC00473A8K010 186 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 IGLV2-14P01704 120 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 IGHG2P01859 326 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 APOA2P02652 100 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 NAT1P18440 290 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 HLA-DMAP28067 261 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 DUTP33316 252 aaKnown RBP10.56□□□□□ -0.72
VPS28-210ENST00000529182 CDK10Q15131 360 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 CENPVQ7Z7K6 275 aaPredicted RBP10.56□□□□□ -0.72
VPS28-210ENST00000529182 LYSMD2Q8IV50 215 aa10.56□□□□□ -0.72
VPS28-210ENST00000529182 NPBQ8NG41 125 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms